Package pl.poznan.put.pdb

Class PdbModresLine

java.lang.Object

pl.poznan.put.pdb.PdbModresLine

All Implemented Interfaces:

Serializable, Comparable<ChainNumberICode>, ChainNumberICode

Direct Known Subclasses:

ImmutablePdbModresLine

@Immutable
public abstract class PdbModresLine
extends Object
implements ChainNumberICode, Serializable

A representation of MODRES line in PDB format.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
PdbModresLine()

Method Summary

Modifier and Type	Method	Description
abstract String	chainIdentifier()
abstract String	comment()
abstract String	idCode()
abstract String	insertionCode()
static PdbModresLine	parse(String line)	Parses text with MODRES line in PDB format.
abstract String	residueName()
abstract int	residueNumber()
abstract String	standardResidueName()
String	toPdb()
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface pl.poznan.put.pdb.ChainNumberICode

compareTo

Constructor Detail

PdbModresLine

public PdbModresLine()

Method Detail

parse

public static PdbModresLine parse(String line)

Parses text with MODRES line in PDB format.

Parameters:

line - A text with MODRES line in PDB format.

Returns:

An instance of this class with fields set to parsed values.

idCode

@Parameter(order=1)
public abstract String idCode()

Returns:

The value of the idCode attribute

residueName

@Parameter(order=2)
public abstract String residueName()

Returns:

The value of the residueName attribute

chainIdentifier

@Parameter(order=3)
public abstract String chainIdentifier()

Specified by:

chainIdentifier in interface ChainNumberICode

Returns:

The value of the chainIdentifier attribute

residueNumber

@Parameter(order=4)
public abstract int residueNumber()

Specified by:

residueNumber in interface ChainNumberICode

Returns:

The value of the residueNumber attribute

insertionCode

@Parameter(order=5)
public abstract String insertionCode()

Specified by:

insertionCode in interface ChainNumberICode

Returns:

The value of the insertionCode attribute

standardResidueName

@Parameter(order=6)
public abstract String standardResidueName()

Returns:

The value of the standardResidueName attribute

comment

@Parameter(order=7)
public abstract String comment()

Returns:

The value of the comment attribute

toString

public final String toString()

Overrides:

toString in class Object

toPdb

public final String toPdb()

Returns:

A line in PDB format.