Uses of Class pl.poznan.put.notation.Saenger (BioCommons 3.0.4 API)

Packages that use Saenger
Package	Description
pl.poznan.put.notation	A set of enums describing different notations used in structural biology.
pl.poznan.put.structure	Package contains classes useful in describing secondary structure (base pairs, helices, etc.)

Uses of Saenger in pl.poznan.put.notation

Methods in pl.poznan.put.notation that return Saenger
Modifier and Type	Method	Description
`static Saenger`	Saenger.`assumeCanonical(BasePair basePair)`	Checks which one of `Saenger` instances matches a canonical base pair of provided sequence.
`static Saenger`	Saenger.`fromNumber(int number)`	Matches a value in range 1-28 to an instance of this class with the same value written as a Roman numeral.
`static Saenger`	Saenger.`fromString(String str)`	Finds an enum that matches the given name or return UNKNOWN otherwise.
`static Saenger`	Saenger.`valueOf(String name)`	Returns the enum constant of this type with the specified name.
`static Saenger[]`	Saenger.`values()`	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in pl.poznan.put.notation with parameters of type Saenger
Modifier and Type	Method	Description
`static boolean`	Saenger.`isCanonical(Saenger saenger)`	Checks if instance of Saenger represents a canonical base pair (XIX, XX and XXVIII).

Uses of Saenger in pl.poznan.put.structure

Methods in pl.poznan.put.structure that return Saenger
Modifier and Type	Method	Description
`Saenger`	AnalyzedBasePair.`saenger()`
`default Saenger`	ClassifiedBasePair.`saenger()`
`Saenger`	ImmutableAnalyzedBasePair.`saenger()`
`Saenger`	ImmutableQuantifiedBasePair.`saenger()`
`Saenger`	QuantifiedBasePair.`saenger()`

Methods in pl.poznan.put.structure with parameters of type Saenger
Modifier and Type	Method	Description
`ImmutableAnalyzedBasePair.Builder`	ImmutableAnalyzedBasePair.Builder.`saenger(Saenger saenger)`	Initializes the value for the `saenger` attribute.
`ImmutableQuantifiedBasePair.Builder`	ImmutableQuantifiedBasePair.Builder.`saenger(Saenger saenger)`	Initializes the value for the `saenger` attribute.
`ImmutableAnalyzedBasePair`	ImmutableAnalyzedBasePair.`withSaenger(Saenger value)`	Copy the current immutable object by setting a value for the `saenger` attribute.
`ImmutableQuantifiedBasePair`	ImmutableQuantifiedBasePair.`withSaenger(Saenger value)`	Copy the current immutable object by setting a value for the `saenger` attribute.