java.lang.Object
- java.lang.Enum<AtomName>
- - pl.poznan.put.atom.AtomName

All Implemented Interfaces:

Serializable, Comparable<AtomName>
```
public enum AtomName
extends Enum<AtomName>
```
A unified atom name found in PDB and mmCIF files with a list of alternative names.

Enum Constant Summary

Enum Constants
Enum Constant	Description
`C`
`C1`
`C10`
`C11`
`C12`
`C13`
`C14`
`C15`
`C16`
`C19`
`C1p`
`C2`
`C21`
`C23`
`C24`
`C2p`
`C3`
`C3p`
`C3T`
`C4`
`C4p`
`C5`
`C5M`
`C5p`
`C5T`
`C6`
`C8`
`CA`
`CAT`
`CAY`
`CB`
`CB1`
`CB2`
`CD`
`CD1`
`CD2`
`CE`
`CE1`
`CE2`
`CE3`
`CG`
`CG1`
`CG2`
`CH2`
`CL`
`CLP`
`CM1`
`CM2`
`CM5`
`CM7`
`CR`
`CRP`
`CT`
`CY`
`CZ`
`CZ2`
`CZ3`
`H1`
`H1p`
`H2`
`H21`
`H22`
`H2p`
`H2pp`
`H3`
`H3p`
`H3T`
`H3T1`
`H3T2`
`H3T3`
`H41`
`H42`
`H4p`
`H5`
`H51`
`H52`
`H53`
`H53p`
`H5p`
`H5pp`
`H5T`
`H5T1`
`H5T2`
`H5T3`
`H6`
`H61`
`H62`
`H8`
`HA`
`HA1`
`HA2`
`HB`
`HB1`
`HB2`
`HB3`
`HD1`
`HD11`
`HD12`
`HD13`
`HD2`
`HD21`
`HD22`
`HD23`
`HD3`
`HE`
`HE1`
`HE2`
`HE21`
`HE22`
`HE3`
`HG`
`HG1`
`HG11`
`HG12`
`HG13`
`HG2`
`HG21`
`HG22`
`HG23`
`HH`
`HH11`
`HH12`
`HH2`
`HH21`
`HH22`
`HL`
`HL1`
`HL2`
`HL3`
`HN`
`HN1`
`HN2`
`HNT`
`HO2p`
`HR`
`HR1`
`HR2`
`HR3`
`HT1`
`HT2`
`HT3`
`HY1`
`HY2`
`HY3`
`HZ`
`HZ1`
`HZ2`
`HZ3`
`K`
`MG`
`MN`
`N`
`N1`
`N2`
`N20`
`N3`
`N4`
`N6`
`N7`
`N9`
`ND1`
`ND2`
`NE`
`NE1`
`NE2`
`NH1`
`NH2`
`NL`
`NR`
`NT`
`NZ`
`O`
`O1`
`O17`
`O18`
`O1A`
`O1B`
`O1C`
`O1G`
`O1P`
`O1P3`
`O2`
`O22`
`O23`
`O2A`
`O2B`
`O2C`
`O2G`
`O2p`
`O2P`
`O2P3`
`O3`
`O3A`
`O3B`
`O3C`
`O3G`
`O3p`
`O3P`
`O3P3`
`O3T`
`O4`
`O4p`
`O5`
`O5p`
`O5T`
`O6`
`OD1`
`OD2`
`OE1`
`OE2`
`OG`
`OG1`
`OH`
`OL`
`OR`
`OT1`
`OT2`
`OY`
`P`
`P3`
`PA`
`PB`
`PC`
`PG`
`SD`
`SG`
`SG1`
`SG2`
`UNKNOWN`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static AtomName`	`fromString(String pdbName)`	Creates an instance from String.
`String`	`getName()`	Gets the default atom name (if more than one is configured).
`AtomType`	`getType()`	Gets enum describing the type of atom that this constant represents.
`boolean`	`isHeavy()`	Checks if atom is heavy (i.e. not a hydrogen).
`boolean`	`matchesName(String pdbName)`	Checks if this constant matches a name found in PDB or mmCIF file.
`static AtomName`	`valueOf(String name)`	Returns the enum constant of this type with the specified name.
`static AtomName[]`	`values()`	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

C
```
public static final AtomName C
```

C1
```
public static final AtomName C1
```

C10
```
public static final AtomName C10
```

C11
```
public static final AtomName C11
```

C12
```
public static final AtomName C12
```

C13
```
public static final AtomName C13
```

C14
```
public static final AtomName C14
```

C15
```
public static final AtomName C15
```

C16
```
public static final AtomName C16
```

C19
```
public static final AtomName C19
```

C1p
```
public static final AtomName C1p
```

C2
```
public static final AtomName C2
```

C21
```
public static final AtomName C21
```

C23
```
public static final AtomName C23
```

C24
```
public static final AtomName C24
```

C2p
```
public static final AtomName C2p
```

C3
```
public static final AtomName C3
```

C3T
```
public static final AtomName C3T
```

C3p
```
public static final AtomName C3p
```

C4
```
public static final AtomName C4
```

C4p
```
public static final AtomName C4p
```

C5
```
public static final AtomName C5
```

C5M
```
public static final AtomName C5M
```

C5T
```
public static final AtomName C5T
```

C5p
```
public static final AtomName C5p
```

C6
```
public static final AtomName C6
```

C8
```
public static final AtomName C8
```

CA
```
public static final AtomName CA
```

CAT
```
public static final AtomName CAT
```

CAY
```
public static final AtomName CAY
```

CB
```
public static final AtomName CB
```

CB1
```
public static final AtomName CB1
```

CB2
```
public static final AtomName CB2
```

CD
```
public static final AtomName CD
```

CD1
```
public static final AtomName CD1
```

CD2
```
public static final AtomName CD2
```

CE
```
public static final AtomName CE
```

CE1
```
public static final AtomName CE1
```

CE2
```
public static final AtomName CE2
```

CE3
```
public static final AtomName CE3
```

CG
```
public static final AtomName CG
```

CG1
```
public static final AtomName CG1
```

CG2
```
public static final AtomName CG2
```

CH2
```
public static final AtomName CH2
```

CL
```
public static final AtomName CL
```

CLP
```
public static final AtomName CLP
```

CM1
```
public static final AtomName CM1
```

CM2
```
public static final AtomName CM2
```

CM5
```
public static final AtomName CM5
```

CM7
```
public static final AtomName CM7
```

CR
```
public static final AtomName CR
```

CRP
```
public static final AtomName CRP
```

CT
```
public static final AtomName CT
```

CY
```
public static final AtomName CY
```

CZ
```
public static final AtomName CZ
```

CZ2
```
public static final AtomName CZ2
```

CZ3
```
public static final AtomName CZ3
```

H1
```
public static final AtomName H1
```

H1p
```
public static final AtomName H1p
```

H2
```
public static final AtomName H2
```

H21
```
public static final AtomName H21
```

H22
```
public static final AtomName H22
```

H2p
```
public static final AtomName H2p
```

H2pp
```
public static final AtomName H2pp
```

H3
```
public static final AtomName H3
```

H3T
```
public static final AtomName H3T
```

H3T1
```
public static final AtomName H3T1
```

H3T2
```
public static final AtomName H3T2
```

H3T3
```
public static final AtomName H3T3
```

H3p
```
public static final AtomName H3p
```

H41
```
public static final AtomName H41
```

H42
```
public static final AtomName H42
```

H4p
```
public static final AtomName H4p
```

H5
```
public static final AtomName H5
```

H51
```
public static final AtomName H51
```

H52
```
public static final AtomName H52
```

H53
```
public static final AtomName H53
```

H53p
```
public static final AtomName H53p
```

H5T
```
public static final AtomName H5T
```

H5T1
```
public static final AtomName H5T1
```

H5T2
```
public static final AtomName H5T2
```

H5T3
```
public static final AtomName H5T3
```

H5p
```
public static final AtomName H5p
```

H5pp
```
public static final AtomName H5pp
```

H6
```
public static final AtomName H6
```

H61
```
public static final AtomName H61
```

H62
```
public static final AtomName H62
```

H8
```
public static final AtomName H8
```

HA
```
public static final AtomName HA
```

HA1
```
public static final AtomName HA1
```

HA2
```
public static final AtomName HA2
```

HB
```
public static final AtomName HB
```

HB1
```
public static final AtomName HB1
```

HB2
```
public static final AtomName HB2
```

HB3
```
public static final AtomName HB3
```

HD1
```
public static final AtomName HD1
```

HD11
```
public static final AtomName HD11
```

HD12
```
public static final AtomName HD12
```

HD13
```
public static final AtomName HD13
```

HD2
```
public static final AtomName HD2
```

HD21
```
public static final AtomName HD21
```

HD22
```
public static final AtomName HD22
```

HD23
```
public static final AtomName HD23
```

HD3
```
public static final AtomName HD3
```

HE
```
public static final AtomName HE
```

HE1
```
public static final AtomName HE1
```

HE2
```
public static final AtomName HE2
```

HE21
```
public static final AtomName HE21
```

HE22
```
public static final AtomName HE22
```

HE3
```
public static final AtomName HE3
```

HG
```
public static final AtomName HG
```

HG1
```
public static final AtomName HG1
```

HG11
```
public static final AtomName HG11
```

HG12
```
public static final AtomName HG12
```

HG13
```
public static final AtomName HG13
```

HG2
```
public static final AtomName HG2
```

HG21
```
public static final AtomName HG21
```

HG22
```
public static final AtomName HG22
```

HG23
```
public static final AtomName HG23
```

HH
```
public static final AtomName HH
```

HH11
```
public static final AtomName HH11
```

HH12
```
public static final AtomName HH12
```

HH2
```
public static final AtomName HH2
```

HH21
```
public static final AtomName HH21
```

HH22
```
public static final AtomName HH22
```

HL
```
public static final AtomName HL
```

HL1
```
public static final AtomName HL1
```

HL2
```
public static final AtomName HL2
```

HL3
```
public static final AtomName HL3
```

HN
```
public static final AtomName HN
```

HN1
```
public static final AtomName HN1
```

HN2
```
public static final AtomName HN2
```

HNT
```
public static final AtomName HNT
```

HO2p
```
public static final AtomName HO2p
```

HR
```
public static final AtomName HR
```

HR1
```
public static final AtomName HR1
```

HR2
```
public static final AtomName HR2
```

HR3
```
public static final AtomName HR3
```

HT1
```
public static final AtomName HT1
```

HT2
```
public static final AtomName HT2
```

HT3
```
public static final AtomName HT3
```

HY1
```
public static final AtomName HY1
```

HY2
```
public static final AtomName HY2
```

HY3
```
public static final AtomName HY3
```

HZ
```
public static final AtomName HZ
```

HZ1
```
public static final AtomName HZ1
```

HZ2
```
public static final AtomName HZ2
```

HZ3
```
public static final AtomName HZ3
```

K
```
public static final AtomName K
```

MG
```
public static final AtomName MG
```

MN
```
public static final AtomName MN
```

N
```
public static final AtomName N
```

N1
```
public static final AtomName N1
```

N2
```
public static final AtomName N2
```

N20
```
public static final AtomName N20
```

N3
```
public static final AtomName N3
```

N4
```
public static final AtomName N4
```

N6
```
public static final AtomName N6
```

N7
```
public static final AtomName N7
```

N9
```
public static final AtomName N9
```

ND1
```
public static final AtomName ND1
```

ND2
```
public static final AtomName ND2
```

NE
```
public static final AtomName NE
```

NE1
```
public static final AtomName NE1
```

NE2
```
public static final AtomName NE2
```

NH1
```
public static final AtomName NH1
```

NH2
```
public static final AtomName NH2
```

NL
```
public static final AtomName NL
```

NR
```
public static final AtomName NR
```

NT
```
public static final AtomName NT
```

NZ
```
public static final AtomName NZ
```

O
```
public static final AtomName O
```

O1
```
public static final AtomName O1
```

O17
```
public static final AtomName O17
```

O18
```
public static final AtomName O18
```

O1A
```
public static final AtomName O1A
```

O1B
```
public static final AtomName O1B
```

O1C
```
public static final AtomName O1C
```

O1G
```
public static final AtomName O1G
```

O1P
```
public static final AtomName O1P
```

O1P3
```
public static final AtomName O1P3
```

O2
```
public static final AtomName O2
```

O22
```
public static final AtomName O22
```

O23
```
public static final AtomName O23
```

O2A
```
public static final AtomName O2A
```

O2B
```
public static final AtomName O2B
```

O2C
```
public static final AtomName O2C
```

O2G
```
public static final AtomName O2G
```

O2P
```
public static final AtomName O2P
```

O2P3
```
public static final AtomName O2P3
```

O2p
```
public static final AtomName O2p
```

O3
```
public static final AtomName O3
```

O3A
```
public static final AtomName O3A
```

O3B
```
public static final AtomName O3B
```

O3C
```
public static final AtomName O3C
```

O3G
```
public static final AtomName O3G
```

O3P
```
public static final AtomName O3P
```

O3P3
```
public static final AtomName O3P3
```

O3T
```
public static final AtomName O3T
```

O3p
```
public static final AtomName O3p
```

O4
```
public static final AtomName O4
```

O4p
```
public static final AtomName O4p
```

O5
```
public static final AtomName O5
```

O5T
```
public static final AtomName O5T
```

O5p
```
public static final AtomName O5p
```

O6
```
public static final AtomName O6
```

OD1
```
public static final AtomName OD1
```

OD2
```
public static final AtomName OD2
```

OE1
```
public static final AtomName OE1
```

OE2
```
public static final AtomName OE2
```

OG
```
public static final AtomName OG
```

OG1
```
public static final AtomName OG1
```

OH
```
public static final AtomName OH
```

OL
```
public static final AtomName OL
```

OR
```
public static final AtomName OR
```

OT1
```
public static final AtomName OT1
```

OT2
```
public static final AtomName OT2
```

OY
```
public static final AtomName OY
```

P
```
public static final AtomName P
```

PA
```
public static final AtomName PA
```

PB
```
public static final AtomName PB
```

PC
```
public static final AtomName PC
```

PG
```
public static final AtomName PG
```

P3
```
public static final AtomName P3
```

SD
```
public static final AtomName SD
```

SG
```
public static final AtomName SG
```

SG1
```
public static final AtomName SG1
```

SG2
```
public static final AtomName SG2
```

UNKNOWN
```
public static final AtomName UNKNOWN
```

Method Detail
- values
```
public static AtomName[] values()
```
  Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
```
for (AtomName c : AtomName.values())
    System.out.println(c);
```
  Returns:
  
  an array containing the constants of this enum type, in the order they are declared
- valueOf
```
public static AtomName valueOf(String name)
```
  Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
  
  Parameters:
  
  name - the name of the enum constant to be returned.
  
  Returns:
  
  the enum constant with the specified name
  
  Throws:
  
  IllegalArgumentException - if this enum type has no constant with the specified name
  
  NullPointerException - if the argument is null
- fromString
```
public static AtomName fromString(String pdbName)
```
  Creates an instance from String. For null or unknown atom names, a special constant UNKNOWN is used.
  
  Parameters:
  
  pdbName - String representation of the atom name.
  
  Returns:
  
  An instance of this enum.
- matchesName
```
public boolean matchesName(String pdbName)
```
  Checks if this constant matches a name found in PDB or mmCIF file. Certain atom names have more than one matching PDB names e.g. O2P/OP2.
  
  Parameters:
  
  pdbName - Name found in PDB or mmCIF file.
  
  Returns:
  
  True if this constant matches pdbName.
- getName
```
public String getName()
```
  Gets the default atom name (if more than one is configured).
  
  Returns:
  
  The default name for this constant.
- isHeavy
```
public boolean isHeavy()
```
  Checks if atom is heavy (i.e. not a hydrogen).
  
  Returns:
  
  True if this constant describes an atom which is not a hydrogen.
- getType
```
public AtomType getType()
```
  Gets enum describing the type of atom that this constant represents.
  
  Returns:
  
  {AtomType} object representing the atom type.

Enum AtomName

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Detail

C

C1

C10

C11

C12

C13

C14

C15

C16

C19

C1p

C2

C21

C23

C24

C2p

C3

C3T

C3p

C4

C4p

C5

C5M

C5T

C5p

C6

C8

CA

CAT

CAY

CB

CB1

CB2

CD

CD1

CD2

CE

CE1

CE2

CE3

CG

CG1

CG2

CH2

CL

CLP

CM1

CM2

CM5

CM7

CR

CRP

CT

CY

CZ

CZ2

CZ3

H1

H1p

H2

H21

H22

H2p

H2pp

H3

H3T

H3T1

H3T2

H3T3

H3p

H41

H42

H4p

H5