| Package | Description |
|---|---|
| pl.poznan.put.atom |
Collection of utility classes to work with atom types, names and atomic bonds.
|
| pl.poznan.put.circular |
Classes to deal with angular data and circular statistics.
|
| pl.poznan.put.circular.conversion |
Contains classes useful in conversion between Cartesian and trigonometric representations.
|
| pl.poznan.put.circular.enums |
Package contains useful enums.
|
| pl.poznan.put.circular.exception |
Exceptions thrown when operations on circular values fail.
|
| pl.poznan.put.circular.samples |
Classes which deal with samples of data.
|
| pl.poznan.put.constant |
Contains classes with useful constant values and static methods.
|
| pl.poznan.put.external.dssr | |
| pl.poznan.put.interfaces |
Interfaces useful in various contexts to clean up class design.
|
| pl.poznan.put.notation |
A set of enums describing different notations used in structural biology.
|
| pl.poznan.put.pdb |
Contains classes responsible for PDB/mmCIF data modelling and analysis.
|
| pl.poznan.put.pdb.analysis |
Contains classes which work on data from PDB or mmCIF files.
|
| pl.poznan.put.protein | |
| pl.poznan.put.rna | |
| pl.poznan.put.structure |
Package contains classes useful in describing secondary structure (base pairs, helices, etc.)
|
| pl.poznan.put.structure.formats | |
| pl.poznan.put.structure.pseudoknots |
Package contains classes that handle pseudoknots in secondary structure.
|
| pl.poznan.put.structure.pseudoknots.dp |
A set of dynamic programming solutions to pseudoknot detection.s
|
| pl.poznan.put.structure.pseudoknots.elimination | |
| pl.poznan.put.torsion |
Contains classes dealing with torsion angles handling.
|
| pl.poznan.put.torsion.range | |
| pl.poznan.put.types | |
| pl.poznan.put.utility |
Contains classes providing various useful functions.
|
| pl.poznan.put.utility.svg |
Contains classes useful for SVG processing.
|