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A

AbstractModuleExtractor - Class in org.semanticweb.owlapi.modularity
Abstract class for convenience implementation of ModuleExtractors able of precomputing global axioms and tautologies.
AbstractOWLDebugger - Class in org.semanticweb.owlapi.debugging
An abstract debugger which provides common infrastructure for finding multiple justification.
AbstractOWLMetric<M extends Serializable> - Class in org.semanticweb.owlapi.metrics
 
AbstractOWLMetric(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.AbstractOWLMetric
Instantiates a new abstract owl metric.
add(OWLEntity) - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
add(int) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
add(int) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
add(int) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
addAll(Stream<OWLEntity>) - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
addAll(FastSet) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
addAll(FastSet) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
addAll(FastSet) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
addAxiom(OWLAxiom, Set<OWLOntology>, OWLOntologyManager) - Static method in class com.clarkparsia.owlapi.explanation.util.OntologyUtils
Add the axiom to all the given ontologies.
addAxiom(OWLAxiom, Stream<OWLOntology>) - Static method in class com.clarkparsia.owlapi.explanation.util.OntologyUtils
Add the axiom to all the given ontologies.
addAxiom(AxiomWrapper) - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
 
addAxioms(Collection<AxiomWrapper>) - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
 
addChild(MutableTree<N>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
addChild(MutableTree<N>, Object) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
addDepAtom(OntologyAtom) - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
 
AlphaExplanationOrderer - Class in uk.ac.manchester.cs.owl.explanation.ordering
Orders an explanation in a flat list, sorting axioms alphabetically.
AlphaExplanationOrderer(OWLObjectRenderer) - Constructor for class uk.ac.manchester.cs.owl.explanation.ordering.AlphaExplanationOrderer
Instantiates a new alpha explanation orderer.
ArrayIntMap - Class in uk.ac.manchester.cs.chainsaw
a multimap for int to collection of int values.
ArrayIntMap() - Constructor for class uk.ac.manchester.cs.chainsaw.ArrayIntMap
 
Atom - Class in uk.ac.manchester.cs.atomicdecomposition
An atom in the atomic decomposition
Atom(Collection<OWLAxiom>) - Constructor for class uk.ac.manchester.cs.atomicdecomposition.Atom
 
AtomicDecomposition - Class in org.semanticweb.owlapi.modularity
Class to represent the atomic decomposition of a set of axioms.
AtomicDecomposition(OWLOntology) - Constructor for class org.semanticweb.owlapi.modularity.AtomicDecomposition
Constructs the AtomicDecomposition for the given axiom base based on the module extraction an SyntacticLocalityModuleExtractor provides by using LocalityClass.STAR.
AtomicDecomposition(OWLOntology, Function<Stream<OWLAxiom>, ? extends ModuleExtractor>) - Constructor for class org.semanticweb.owlapi.modularity.AtomicDecomposition
Constructs the AtomicDecomposition for the given axiom base based on the module extraction the ModuleExtractor the given Function supplies.
AtomicDecomposition(Stream<OWLAxiom>) - Constructor for class org.semanticweb.owlapi.modularity.AtomicDecomposition
Constructs the AtomicDecomposition for the given axiom base based on the module extraction an SyntacticLocalityModuleExtractor provides by using LocalityClass.STAR.
AtomicDecomposition(Stream<OWLAxiom>, Function<Stream<OWLAxiom>, ? extends ModuleExtractor>) - Constructor for class org.semanticweb.owlapi.modularity.AtomicDecomposition
Constructs the AtomicDecomposition for the given axiom base based on the module extraction the ModuleExtractor the given Function supplies.
AtomicDecomposition - Interface in uk.ac.manchester.cs.atomicdecomposition
The atomic decomposition graph
AtomicDecomposition.Atom - Class in org.semanticweb.owlapi.modularity
Class to represent atoms.
AtomicDecompositionImpl - Class in uk.ac.manchester.cs.atomicdecomposition
Atomic decomposition implementation.
AtomicDecompositionImpl(OWLOntology) - Constructor for class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
AtomicDecompositionImpl(OWLOntology, ModuleType) - Constructor for class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
AtomicDecompositionImpl(OWLOntology, ModuleType, boolean) - Constructor for class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
AtomicDecompositionImpl(List<OWLAxiom>, ModuleType) - Constructor for class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
AtomList - Class in org.semanticweb.owlapitools.decomposition
Atomic ontology structure.
AtomList() - Constructor for class org.semanticweb.owlapitools.decomposition.AtomList
 
atomOf(OWLAxiom) - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition
Returns the AtomicDecomposition.Atom associated with the given OWLAxiom.
atoms() - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition
Returns a Stream of the AtomicDecomposition.Atoms computed by this AtomicDecomposition.
AverageAssertedNamedSuperclassCount - Class in org.semanticweb.owlapi.metrics
 
AverageAssertedNamedSuperclassCount(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.AverageAssertedNamedSuperclassCount
Instantiates a new average asserted named superclass count.
axiomBase() - Method in class org.semanticweb.owlapi.modularity.AbstractModuleExtractor
 
axiomBase() - Method in class org.semanticweb.owlapi.modularity.locality.LocalityModuleExtractor
 
axiomBase() - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Return the axioms all modules of this ModuleExtractor are computed against, including global axioms and tautologies.
AxiomCount - Class in org.semanticweb.owlapi.metrics
 
AxiomCount(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.AxiomCount
Instantiates a new axiom count.
AxiomCountMetric - Class in org.semanticweb.owlapi.metrics
 
AxiomCountMetric(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.AxiomCountMetric
Instantiates a new axiom count metric.
axioms() - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
 
axioms() - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition
 
AxiomSelector - Class in org.semanticweb.owlapitools.decomposition
A filter for axioms
AxiomTypeCountMetricFactory - Class in org.semanticweb.owlapi.metrics
 
AxiomTypeMetric - Class in org.semanticweb.owlapi.metrics
 
AxiomTypeMetric(OWLOntology, AxiomType<?>) - Constructor for class org.semanticweb.owlapi.metrics.AxiomTypeMetric
Instantiates a new axiom type metric.
AxiomWrapper - Class in org.semanticweb.owlapitools.decomposition
Wrapper around an OWLAxiom to hold attributes such as used, included in a module, included in search space and atom which contains it.
AxiomWrapper(OWLAxiom) - Constructor for class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 

B

beginTransaction() - Method in class com.clarkparsia.owlapi.explanation.SingleExplanationGeneratorImpl
 
beginTransaction() - Method in interface com.clarkparsia.owlapi.explanation.TransactionAwareSingleExpGen
Indicates to the explanation generator that a transaction which may modify the ontology state is starting.
BlackBoxExplanation - Class in com.clarkparsia.owlapi.explanation
A black box explanation.
BlackBoxExplanation(OWLOntology, OWLReasonerFactory, OWLReasoner) - Constructor for class com.clarkparsia.owlapi.explanation.BlackBoxExplanation
Instantiates a new black box explanation.
BlackBoxExplanation(OWLOntology, OWLReasonerFactory, OWLReasoner, int) - Constructor for class com.clarkparsia.owlapi.explanation.BlackBoxExplanation
Instantiates a new black box explanation.
BlackBoxOWLDebugger - Class in org.semanticweb.owlapi.debugging
This is an implementation of a black box debugger.
BlackBoxOWLDebugger(OWLOntologyManager, OWLOntology, OWLReasonerFactory) - Constructor for class org.semanticweb.owlapi.debugging.BlackBoxOWLDebugger
Instantiates a new black box owl debugger.
BlackBoxOWLDebugger(OWLOntologyManager, OWLOntology, OWLReasonerFactory, int) - Constructor for class org.semanticweb.owlapi.debugging.BlackBoxOWLDebugger
Instantiates a new black box owl debugger.
BotEquivalenceEvaluator - Class in org.semanticweb.owlapitools.decomposition
check whether class expressions are equivalent to bottom wrt given locality class
BotEquivalenceEvaluator(LocalityChecker) - Constructor for class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
buildAllDepAtoms(Set<OntologyAtom>) - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
build all dep atoms; filter them from DepAtoms
buildModulariser(List<AxiomWrapper>, LocalityChecker) - Static method in class org.semanticweb.owlapitools.decomposition.Decomposer
 

C

clear() - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
clear() - Method in class org.semanticweb.owlapitools.decomposition.SigIndex
clear internal structures
clear() - Method in class uk.ac.manchester.cs.chainsaw.ArrayIntMap
Clear the map
clear() - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
clear the set
clear() - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
clear() - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
clearChildren() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
remove all children.
com.clarkparsia.owlapi.explanation - package com.clarkparsia.owlapi.explanation
Explanation package.
com.clarkparsia.owlapi.explanation.io - package com.clarkparsia.owlapi.explanation.io
Explanation renderers package.
com.clarkparsia.owlapi.explanation.util - package com.clarkparsia.owlapi.explanation.util
Explanation utils.
com.clarkparsia.owlapi.modularity.locality - package com.clarkparsia.owlapi.modularity.locality
Locality package.
completeSet(int) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
completeSet(int) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
completeSet(int) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
ConciseExplanationRenderer - Class in com.clarkparsia.owlapi.explanation.io
Explanation renderer in concise form.
ConciseExplanationRenderer() - Constructor for class com.clarkparsia.owlapi.explanation.io.ConciseExplanationRenderer
 
constructHittingSetTree(Set<OWLAxiom>, Set<Set<OWLAxiom>>, Set<Set<OWLAxiom>>, Set<OWLAxiom>) - Method in class org.semanticweb.owlapi.debugging.AbstractOWLDebugger
This is a recursive method that builds a hitting set tree to obtain all justifications for an unsatisfiable class.
contains(K, V) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
contains(OWLEntity) - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
contains(OWLAxiom) - Method in class uk.ac.manchester.cs.atomicdecomposition.Atom
 
contains(int) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
contains(int) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
contains(int) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
containsAll(FastSet) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
containsAll(FastSet) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
containsAll(FastSet) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
containsAny(FastSet) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
containsAny(FastSet) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
containsAny(FastSet) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
containsAxiom(OWLAxiom) - Method in class org.semanticweb.owlapi.modularity.AbstractModuleExtractor
 
containsAxiom(OWLAxiom) - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
 
containsAxiom(OWLAxiom) - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition
Returns whether or not the given OWLAxiom is part of the axiom base of this AtomicDecomposition.
containsAxiom(OWLAxiom) - Method in class org.semanticweb.owlapi.modularity.locality.LocalityModuleExtractor
 
containsAxiom(OWLAxiom) - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Returns whether or not the axiom base of this ModuleExtractor contains the given OWLAxiom.
containsKey(K) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
containsKey(int) - Method in class uk.ac.manchester.cs.chainsaw.ArrayIntMap
 
containsUnreferencedEntity(OWLOntology, OWLClassExpression) - Static method in class com.clarkparsia.owlapi.explanation.util.OntologyUtils
Determines if a class description contains any unreferenced entities with respect to the ontology that contains the entailments which are being explained.
containsValue(V) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
convert(OWLAxiom) - Method in class com.clarkparsia.owlapi.explanation.SatisfiabilityConverter
Convert.
convertToNormalForm(OWLClassExpression) - Method in class org.semanticweb.owlapi.normalform.NegationalNormalFormConverter
 
convertToNormalForm(OWLClassExpression) - Method in interface org.semanticweb.owlapi.normalform.NormalFormRewriter
Convert to normal form.
create() - Static method in class uk.ac.manchester.cs.chainsaw.FastSetFactory
 
createMetrics(OWLOntology) - Static method in class org.semanticweb.owlapi.metrics.AxiomTypeCountMetricFactory
Creates a new AxiomTypeCountMetric object.

D

DebuggerClassExpressionGenerator - Class in org.semanticweb.owlapi.debugging
 
DebuggerClassExpressionGenerator(OWLDataFactory) - Constructor for class org.semanticweb.owlapi.debugging.DebuggerClassExpressionGenerator
Instantiates a new debugger class expression generator.
Decomposer - Class in org.semanticweb.owlapitools.decomposition
Atomic decomposer for an ontology.
Decomposer(List<AxiomWrapper>, LocalityChecker) - Constructor for class org.semanticweb.owlapitools.decomposition.Decomposer
 
DEFAULT_INITIAL_EXPANSION_LIMIT - Static variable in class com.clarkparsia.owlapi.explanation.BlackBoxExplanation
default expansion limit.
DefaultExplanationGenerator - Class in com.clarkparsia.owlapi.explanation
 
DefaultExplanationGenerator(OWLOntologyManager, OWLReasonerFactory, OWLOntology, ExplanationProgressMonitor) - Constructor for class com.clarkparsia.owlapi.explanation.DefaultExplanationGenerator
Instantiates a new default explanation generator.
DefaultExplanationGenerator(OWLOntologyManager, OWLReasonerFactory, OWLOntology, OWLReasoner, ExplanationProgressMonitor) - Constructor for class com.clarkparsia.owlapi.explanation.DefaultExplanationGenerator
Instantiates a new default explanation generator.
DefinitionTracker - Class in com.clarkparsia.owlapi.explanation.util
Tracker for definitions.
DefinitionTracker(OWLOntology) - Constructor for class com.clarkparsia.owlapi.explanation.util.DefinitionTracker
Instantiates a new definition tracker.
dependencies() - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
Returns the AtomicDecomposition.Atoms this AtomicDecomposition.Atom (directly or indirectly) depends on, excluding this atom.
dependents() - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
Returns the AtomicDecomposition.Atoms that (directly or indirectly) depend on this AtomicDecomposition.Atom, excluding this atom.
dependsOn(AtomicDecomposition.Atom) - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
Checks if this AtomicDecomposition.Atom (directly or indirectly) depends on the given AtomicDecomposition.Atom.
directDependencies() - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
Returns the AtomicDecomposition.Atoms this AtomicDecomposition.Atom DIRECTLY depends on, excluding this atom.
directDependents() - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
Returns the AtomicDecomposition.Atoms that DIRECTLY depend on this AtomicDecomposition.Atom, excluding this atom.
directlyDependsOn(AtomicDecomposition.Atom) - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
Checks if this AtomicDecomposition.Atom DIRECTLY depends on the given one.
dispose() - Method in class com.clarkparsia.owlapi.explanation.BlackBoxExplanation
 
dispose() - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 
dispose() - Method in interface com.clarkparsia.owlapi.explanation.SingleExplanationGenerator
dispose of the reasoners and ontologies.
dispose() - Method in class org.semanticweb.owlapi.debugging.BlackBoxOWLDebugger
 
dispose() - Method in interface org.semanticweb.owlapi.debugging.OWLDebugger
dispose of resources locked such as reasoners.
dispose() - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
 
dispose() - Method in interface org.semanticweb.owlapi.metrics.OWLMetric
Disposes of the metric.
DLExpressivity - Class in org.semanticweb.owlapi.metrics
 
DLExpressivity(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.DLExpressivity
 
DoubleValuedMetric - Class in org.semanticweb.owlapi.metrics
 
DoubleValuedMetric(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.DoubleValuedMetric
Instantiates a new double valued metric.
dump(PrintWriter) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
dump(PrintWriter, int) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
dump(PrintWriter) - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Dump.
dump(PrintWriter, int) - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Dump.

E

endRendering() - Method in class com.clarkparsia.owlapi.explanation.io.ConciseExplanationRenderer
 
endRendering() - Method in interface com.clarkparsia.owlapi.explanation.io.ExplanationRenderer
end of rendering.
endRendering() - Method in class com.clarkparsia.owlapi.explanation.io.SilentExplanationRenderer
 
endTransaction() - Method in class com.clarkparsia.owlapi.explanation.SingleExplanationGeneratorImpl
 
endTransaction() - Method in interface com.clarkparsia.owlapi.explanation.TransactionAwareSingleExpGen
End a transaction.
EntailedAxiomTree - Class in uk.ac.manchester.cs.owl.explanation.ordering
 
EntailedAxiomTree(OWLAxiom) - Constructor for class uk.ac.manchester.cs.owl.explanation.ordering.EntailedAxiomTree
Instantiates a new entailed axiom tree.
equals(Object) - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
equals(Object) - Method in class uk.ac.manchester.cs.atomicdecomposition.Atom
 
everyModuleContains(OWLAxiom) - Method in class org.semanticweb.owlapi.modularity.AbstractModuleExtractor
 
everyModuleContains(OWLAxiom) - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Returns true if it is guaranteed that the given OWLAxiom is contained in every module calculated by the module extraction method this ModuleExtractor is based on; false when no such guarantee can be made (Note: This does not mean that there is some module regardless of other axioms or the signature that does not contain the given axiom).
ExplanationGenerator - Interface in com.clarkparsia.owlapi.explanation
a generator for explanations.
ExplanationOrderer - Interface in uk.ac.manchester.cs.owl.explanation.ordering
 
ExplanationOrdererImpl - Class in uk.ac.manchester.cs.owl.explanation.ordering
Provides ordering and indenting of explanations based on various ordering heuristics.
ExplanationOrdererImpl(OWLOntologyManager) - Constructor for class uk.ac.manchester.cs.owl.explanation.ordering.ExplanationOrdererImpl
Instantiates a new explanation orderer impl.
ExplanationOrdererImplNoManager - Class in uk.ac.manchester.cs.owl.explanation.ordering
Provides ordering and indenting of explanations based on various ordering heuristics.
ExplanationOrdererImplNoManager() - Constructor for class uk.ac.manchester.cs.owl.explanation.ordering.ExplanationOrdererImplNoManager
Instantiates a new explanation orderer impl.
ExplanationProgressMonitor - Interface in com.clarkparsia.owlapi.explanation.util
A progress monitor for an explanation generator.
ExplanationRenderer - Interface in com.clarkparsia.owlapi.explanation.io
Renderer for explanations.
ExplanationTree - Class in uk.ac.manchester.cs.owl.explanation.ordering
 
ExplanationTree(OWLAxiom) - Constructor for class uk.ac.manchester.cs.owl.explanation.ordering.ExplanationTree
Instantiates a new explanation tree.
extract(Stream<OWLEntity>, Optional<Predicate<OWLAxiom>>) - Method in class org.semanticweb.owlapi.modularity.locality.LocalityModuleExtractor
 
extract(Stream<OWLEntity>) - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Extracts a module with respect to the given signature against the axiom base of this ModuleExtractor.
extract(Stream<OWLEntity>, Optional<Predicate<OWLAxiom>>) - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Extracts a module with respect to the given signature against the subset of the axiom base this ModuleExtractors axiom base that matches the given Predicate, if any.
extract(Stream<OWLEntity>, Predicate<OWLAxiom>) - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Extracts a module with respect to the given signature against the subset of the axiom base this ModuleExtractors axiom base that matches the given Predicate.
extract(Set<OWLEntity>) - Method in interface org.semanticweb.owlapi.modularity.OntologySegmenter
Returns a set of axioms that is a segment of the ontology associated with this segmenter.
extract(Set<OWLEntity>, int, int, OWLReasoner) - Method in interface org.semanticweb.owlapi.modularity.OntologySegmenter
Returns a set of axioms that is a segment of the ontology associated with this segmenter.
extract(List<AxiomWrapper>, Signature, ModuleType) - Method in class org.semanticweb.owlapitools.decomposition.Modularizer
extract module wrt SIGNATURE and TYPE from the set of axioms
extract(AxiomWrapper, Signature, ModuleType) - Method in class org.semanticweb.owlapitools.decomposition.Modularizer
 
extract(Set<OWLEntity>) - Method in class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
 
extract(Set<OWLEntity>, int, int, OWLReasoner) - Method in class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
Extracts a module from the associated ontology for a given signature and the associated module type, and returns the module as a set of axioms.
extractAsOntology(Stream<OWLEntity>, OWLOntologyManager, IRI) - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Extracts a module as an OWLOntology with respect to the given signature over the given axiom base.
extractAsOntology(Set<OWLEntity>, IRI) - Method in interface org.semanticweb.owlapi.modularity.OntologySegmenter
Returns an ontology that is a segment of the ontology associated with this segmenter.
extractAsOntology(Set<OWLEntity>, IRI, int, int, OWLReasoner) - Method in interface org.semanticweb.owlapi.modularity.OntologySegmenter
Returns an ontology that is a segment of the ontology associated with this segmenter.
extractAsOntology(Set<OWLEntity>, IRI) - Method in class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
 
extractAsOntology(Set<OWLEntity>, IRI, int, int, OWLReasoner) - Method in class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
 

F

FastSet - Interface in uk.ac.manchester.cs.chainsaw
sorted set of ints.
FastSetFactory - Class in uk.ac.manchester.cs.chainsaw
factory for int sets
FastSetSimple - Class in uk.ac.manchester.cs.chainsaw
 
FastSetSimple() - Constructor for class uk.ac.manchester.cs.chainsaw.FastSetSimple
Default constructor.
FastSetSimple(FastSetSimple, FastSetSimple) - Constructor for class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
fillDepthFirst() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
fillDepthFirst() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Fill depth first.
filterDep() - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
remove all atoms in AllDepAtoms from DepAtoms
foundAllExplanations() - Method in interface com.clarkparsia.owlapi.explanation.util.ExplanationProgressMonitor
Called when all explanations have been found.
foundExplanation(Set<OWLAxiom>) - Method in interface com.clarkparsia.owlapi.explanation.util.ExplanationProgressMonitor
Called when an explanation has been found.

G

GCICount - Class in org.semanticweb.owlapi.metrics
 
GCICount(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.GCICount
 
get(int) - Method in class org.semanticweb.owlapitools.decomposition.AtomList
 
get(K) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
returns a mutable set of values connected to the key; if no value is connected, returns an immutable empty set
get(int) - Method in class uk.ac.manchester.cs.chainsaw.ArrayIntMap
returns a mutable set of values connected to the key; if no value is connected, returns an immutable empty set
get(int) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
get(int) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
get(int) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
getAllDepAtoms(Set<OntologyAtom>) - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
get all the atoms the current one depends on; build this set if necessary
getAllSOSForInconsistentClass(OWLClassExpression) - Method in class org.semanticweb.owlapi.debugging.AbstractOWLDebugger
 
getAllSOSForInconsistentClass(OWLClassExpression) - Method in interface org.semanticweb.owlapi.debugging.OWLDebugger
Get all SOS for inconsistent class.
getAllValues() - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
getAllValues() - Method in class uk.ac.manchester.cs.chainsaw.ArrayIntMap
 
getAOS() - Method in class org.semanticweb.owlapitools.decomposition.Decomposer
 
getAOS(ModuleType) - Method in class org.semanticweb.owlapitools.decomposition.Decomposer
 
getAtom() - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
getAtomAxioms() - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
 
getAtomForAxiom(OWLAxiom) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getAtomForAxiom(OWLAxiom) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getAtomList() - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getAtomList() - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getAtoms() - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getAtoms() - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getAxiom() - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
getAxiomCount() - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
Returns the number of axioms within this AtomicDecomposition.Atom.
getAxioms() - Method in class org.semanticweb.owlapi.metrics.AxiomCountMetric
Gets the axioms.
getAxioms(OWLEntity) - Method in class org.semanticweb.owlapitools.decomposition.SigIndex
given an entity, return a set of all axioms that contain this entity in a signature
getAxioms() - Method in class uk.ac.manchester.cs.atomicdecomposition.Atom
 
getAxiomType() - Method in class org.semanticweb.owlapi.metrics.AxiomTypeMetric
Gets the axiom type.
getBottomAtoms() - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getBottomAtoms() - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getChildAxioms(OWLAxiom) - Method in class org.semanticweb.owlapi.debugging.JustificationMap
Gets the child axioms.
getChildCount() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getChildCount() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
A convenience method that gets the number of child nodes that this node has.
getChildren() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getChildren() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Gets the children of this tree node.
getComplementedClassExpressions(OWLClassExpression) - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
Gets the complemented class expressions.
getDebuggerClassExpression() - Method in class org.semanticweb.owlapi.debugging.DebuggerClassExpressionGenerator
Gets the debugger class expression.
getDefinitionTracker() - Method in class com.clarkparsia.owlapi.explanation.SingleExplanationGeneratorImpl
 
getDependencies() - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
 
getDependencies(Atom) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getDependencies(Atom, boolean) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getDependencies(Atom) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getDependencies(Atom, boolean) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getDependents(Atom) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getDependents(Atom, boolean) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getDependents(Atom) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getDependents(Atom, boolean) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getEdge(Tree<N>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getEdge(Tree<N>) - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
 
getExplanation(OWLClassExpression) - Method in class com.clarkparsia.owlapi.explanation.BlackBoxExplanation
 
getExplanation(OWLClassExpression) - Method in class com.clarkparsia.owlapi.explanation.DefaultExplanationGenerator
 
getExplanation(OWLAxiom) - Method in class com.clarkparsia.owlapi.explanation.DefaultExplanationGenerator
Gets the explanation.
getExplanation(OWLClassExpression) - Method in interface com.clarkparsia.owlapi.explanation.ExplanationGenerator
Returns a single explanation for the given unsatisfiable class.
getExplanation(OWLClassExpression) - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 
getExplanation(OWLClassExpression) - Method in interface com.clarkparsia.owlapi.explanation.SingleExplanationGenerator
Get a single explanation for an arbitrary class expression, or empty set if the given expression is satisfiable.
getExplanations(OWLClassExpression) - Method in class com.clarkparsia.owlapi.explanation.DefaultExplanationGenerator
 
getExplanations(OWLAxiom) - Method in class com.clarkparsia.owlapi.explanation.DefaultExplanationGenerator
Gets the explanations.
getExplanations(OWLClassExpression, int) - Method in class com.clarkparsia.owlapi.explanation.DefaultExplanationGenerator
 
getExplanations(OWLAxiom, int) - Method in class com.clarkparsia.owlapi.explanation.DefaultExplanationGenerator
Gets the explanations.
getExplanations(OWLClassExpression) - Method in interface com.clarkparsia.owlapi.explanation.ExplanationGenerator
Returns all the explanations for the given unsatisfiable class.
getExplanations(OWLClassExpression, int) - Method in interface com.clarkparsia.owlapi.explanation.ExplanationGenerator
Return a specified number of explanations for the given unsatisfiable class.
getExplanations(OWLClassExpression) - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 
getExplanations(OWLClassExpression, int) - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 
getId() - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
getId() - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
 
getLabel() - Method in class uk.ac.manchester.cs.atomicdecomposition.Atom
 
getLocalityChecker() - Method in class org.semanticweb.owlapitools.decomposition.Modularizer
 
getLocalityChecker() - Method in class uk.ac.manchester.cs.factplusplusad.Modularizer
 
getLocalityClass() - Method in class org.semanticweb.owlapi.modularity.locality.LocalityModuleExtractor
Returns the locality class used by this LocalityModuleExtractor.
getManager() - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
 
getManager() - Method in interface org.semanticweb.owlapi.metrics.OWLMetric
Gets the ontology manager which, amongst other things can be used to obtain the imports closure of the current ontology.
getMaxDepth() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getMetrics() - Method in class org.semanticweb.owlapi.metrics.OWLMetricManager
 
getModularizer() - Method in class org.semanticweb.owlapitools.decomposition.Decomposer
 
getModule(Stream<OWLEntity>, boolean, ModuleType) - Method in class org.semanticweb.owlapitools.decomposition.Decomposer
 
getModule() - Method in class org.semanticweb.owlapitools.decomposition.Modularizer
 
getModule() - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
 
getModule(Stream<OWLEntity>, boolean, ModuleType) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getModule(Stream<OWLEntity>, boolean, ModuleType) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getModule() - Method in class uk.ac.manchester.cs.factplusplusad.Modularizer
 
getModule(Stream<OWLEntity>, ModuleType) - Method in class uk.ac.manchester.cs.factplusplusad.OntologyBasedModularizer
 
getModuleType() - Method in class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
Returns the module type for this extractor.
getName() - Method in class org.semanticweb.owlapi.metrics.AverageAssertedNamedSuperclassCount
 
getName() - Method in class org.semanticweb.owlapi.metrics.AxiomCount
 
getName() - Method in class org.semanticweb.owlapi.metrics.DLExpressivity
 
getName() - Method in class org.semanticweb.owlapi.metrics.HiddenGCICount
 
getName() - Method in class org.semanticweb.owlapi.metrics.ImportClosureSize
 
getName() - Method in class org.semanticweb.owlapi.metrics.MaximumNumberOfNamedSuperclasses
 
getName() - Method in class org.semanticweb.owlapi.metrics.NumberOfClassesWithMultipleInheritance
 
getName() - Method in class org.semanticweb.owlapi.metrics.ObjectCountMetric
 
getName() - Method in interface org.semanticweb.owlapi.metrics.OWLMetric
Gets the human readable name of this metric.
getName() - Method in class org.semanticweb.owlapi.metrics.UnsatisfiableClassCountMetric
 
getNonLocal(Stream<OWLEntity>, ModuleType) - Method in class org.semanticweb.owlapitools.decomposition.Decomposer
 
getNonLocal(boolean) - Method in class org.semanticweb.owlapitools.decomposition.SigIndex
get the non-local axioms with top-locality value TOP
getOntologies() - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
Gets the ontologies.
getOntology() - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 
getOntology() - Method in interface com.clarkparsia.owlapi.explanation.SingleExplanationGenerator
Gets the ontology.
getOntology() - Method in class com.clarkparsia.owlapi.explanation.SingleExplanationGeneratorImpl
 
getOntology() - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
 
getOntology() - Method in interface org.semanticweb.owlapi.metrics.OWLMetric
Gets the ontology which the value of the metric should be based on.
getOntologyManager() - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 
getOntologyManager() - Method in interface com.clarkparsia.owlapi.explanation.SingleExplanationGenerator
Gets the ontology manager.
getOntologyManager() - Method in class com.clarkparsia.owlapi.explanation.SingleExplanationGeneratorImpl
 
getOrderedExplanation(OWLAxiom, Set<OWLAxiom>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.AlphaExplanationOrderer
 
getOrderedExplanation(OWLAxiom, Set<OWLAxiom>) - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.ExplanationOrderer
Gets an ordered (and possibly indented) explanation.
getOrderedExplanation(OWLAxiom, Set<OWLAxiom>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.ExplanationOrdererImplNoManager
 
getOrderedExplanation(OWLAxiom, Set<OWLAxiom>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.NullExplanationOrderer
 
getOWLOntology() - Method in class org.semanticweb.owlapi.debugging.AbstractOWLDebugger
 
getOWLOntology() - Method in interface org.semanticweb.owlapi.debugging.OWLDebugger
Gets the ontology.
getParent() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getParent() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Gets the parent of this tree node.
getPathToRoot() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getPathToRoot() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Gets the path to root.
getPrincipalIdeal(Atom) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getPrincipalIdeal(Atom) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getPrincipalIdealSignature(Atom) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getPrincipalIdealSignature(Atom) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getReasoner() - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 
getReasoner() - Method in interface com.clarkparsia.owlapi.explanation.SingleExplanationGenerator
Gets the reasoner.
getReasoner() - Method in class com.clarkparsia.owlapi.explanation.SingleExplanationGeneratorImpl
 
getReasonerFactory() - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 
getReasonerFactory() - Method in interface com.clarkparsia.owlapi.explanation.SingleExplanationGenerator
Gets the reasoner factory.
getReasonerFactory() - Method in class com.clarkparsia.owlapi.explanation.SingleExplanationGeneratorImpl
 
getRelatedAtoms(Atom) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getRelatedAtoms(Atom) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getRoot() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getRoot() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
A convenience method that gets the root of this tree.
getRootAxioms() - Method in class org.semanticweb.owlapi.debugging.JustificationMap
Gets the root axioms.
getSignature() - Method in interface org.semanticweb.owlapitools.decomposition.LocalityChecker
 
getSignature() - Method in class org.semanticweb.owlapitools.decomposition.Modularizer
 
getSignature() - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
getSignature() - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
getSignature() - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
getSignature() - Method in class uk.ac.manchester.cs.atomicdecomposition.Atom
 
getSingleExplanationGenerator() - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
Gets the single explanation generator.
getSize() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getSOSForInconsistentClass(OWLClassExpression) - Method in class org.semanticweb.owlapi.debugging.BlackBoxOWLDebugger
 
getSOSForInconsistentClass(OWLClassExpression) - Method in interface org.semanticweb.owlapi.debugging.OWLDebugger
Gets the SOS for inconsistent class.
getTautologies() - Method in class org.semanticweb.owlapitools.decomposition.Decomposer
 
getTautologies() - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getTautologies() - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getTermBasedIndex() - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getTermBasedIndex() - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getTopAtoms() - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
getTopAtoms() - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
getUserObject() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getUserObject() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Gets the "content" of this tree node.
getUserObjectClosure() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getUserObjectClosure() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Gets the user object closure.
getUserObjectPathToRoot() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
getUserObjectPathToRoot() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Gets the user object path to root.
getValue() - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
 
getValue() - Method in interface org.semanticweb.owlapi.metrics.OWLMetric
Gets the value of this metric.
globals() - Method in class org.semanticweb.owlapi.modularity.AbstractModuleExtractor
 
globals() - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Returns from the axiom base of this extractor exactly those that are guaranteed to be contained in every module calculated by this ModuleExtractor.

H

hashCode() - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
hashCode() - Method in class uk.ac.manchester.cs.atomicdecomposition.Atom
 
HiddenGCICount - Class in org.semanticweb.owlapi.metrics
Counts the number of "hidden" GCIs in an ontology imports closure.
HiddenGCICount(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.HiddenGCICount
 
HSTExplanationGenerator - Class in com.clarkparsia.owlapi.explanation
HST explanation generator.
HSTExplanationGenerator(TransactionAwareSingleExpGen) - Constructor for class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 

I

IdentityMultiMap<K,V> - Class in org.semanticweb.owlapitools.decomposition
 
IdentityMultiMap() - Constructor for class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
ImportClosureSize - Class in org.semanticweb.owlapi.metrics
 
ImportClosureSize(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.ImportClosureSize
Instantiates a new import closure size.
IntegerValuedMetric - Class in org.semanticweb.owlapi.metrics
An OWLMetric that returns an integer value.
intersect(Signature) - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
intersect(FastSet) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
intersect(FastSet) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
intersect(FastSet) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
isBotEquivalent(OWLObject) - Method in interface org.semanticweb.owlapitools.decomposition.LocalityChecker
 
isBotEquivalent(OWLObject) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
isBotEquivalent(OWLObject) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
isBottomAtom(Atom) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
isBottomAtom(Atom) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
isCancelled() - Method in interface com.clarkparsia.owlapi.explanation.util.ExplanationProgressMonitor
Determines if the process of generating explanations has been cancelled.
isDefined(OWLEntity) - Method in class com.clarkparsia.owlapi.explanation.util.DefinitionTracker
Checks if this entity is referred by a logical axiom in the imports closure of the designated ontology.
isDefined(OWLClassExpression) - Method in class com.clarkparsia.owlapi.explanation.util.DefinitionTracker
Checks if all the entities referred in the given concept are also referred by a logical axiom in the imports closure of the designated ontology.
isDependencyOf(AtomicDecomposition.Atom) - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
Checks if the given AtomicDecomposition.Atom (directly or indirectly) depends on this AtomicDecomposition.Atom.
isDirectDependencyOf(AtomicDecomposition.Atom) - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition.Atom
Checks if the given AtomicDecomposition.Atom DIRECTLY depends on this AtomicDecomposition.Atom.
isEmpty() - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
isEmpty() - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
isEmpty() - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
isEntailed() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.EntailedAxiomTree
 
isEntailed() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.ExplanationTree
Checks if is entailed.
isImportsClosureUsed() - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
 
isImportsClosureUsed() - Method in interface org.semanticweb.owlapi.metrics.OWLMetric
Determines if the computation of the metric should take into account the imports closure of the current ontology.
isInModule() - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
isInNormalForm(OWLClassExpression) - Method in class org.semanticweb.owlapi.normalform.NegationalNormalFormConverter
 
isInNormalForm(OWLClassExpression) - Method in interface org.semanticweb.owlapi.normalform.NormalFormRewriter
Checks if is in normal form.
isInSearchSpace() - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
isLeaf() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
isLeaf() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
A convenience method that determines if this node is a leaf node (because it has no children).
isLocal(OWLAxiom, Collection<OWLEntity>) - Method in interface com.clarkparsia.owlapi.modularity.locality.LocalityEvaluator
Tests whether a given axiom is local with respect to a given signature.
isLocal(OWLAxiom, Collection<OWLEntity>) - Method in class com.clarkparsia.owlapi.modularity.locality.SemanticLocalityEvaluator
 
isLocal(OWLAxiom, Collection<OWLEntity>) - Method in class com.clarkparsia.owlapi.modularity.locality.SyntacticLocalityEvaluator
 
isLocal(OWLAxiom, Collection<OWLEntity>) - Method in interface org.semanticweb.owlapi.modularity.locality.LocalityEvaluator
Tests whether the given axiom is local with respect to the given signature.
isLocal(OWLAxiom, Stream<OWLEntity>) - Method in interface org.semanticweb.owlapi.modularity.locality.LocalityEvaluator
Tests whether the given axiom is local with respect to the given signature.
isLocal(OWLAxiom, Collection<OWLEntity>) - Method in class org.semanticweb.owlapi.modularity.locality.SemanticLocalityEvaluator
 
isLocal(OWLAxiom, Collection<OWLEntity>) - Method in enum org.semanticweb.owlapi.modularity.locality.SyntacticLocalityEvaluator
 
isRoot() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
isRoot() - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
A convenience method that determines if this is a root node (because it has no parent node).
isTautology(OWLAxiom, ModuleType) - Method in class org.semanticweb.owlapitools.decomposition.Modularizer
 
isTautology(OWLAxiom, ModuleType) - Method in class uk.ac.manchester.cs.factplusplusad.Modularizer
 
isTopAtom(Atom) - Method in interface uk.ac.manchester.cs.atomicdecomposition.AtomicDecomposition
 
isTopAtom(Atom) - Method in class uk.ac.manchester.cs.atomicdecomposition.AtomicDecompositionImpl
 
isTopEquivalent(OWLObject) - Method in interface org.semanticweb.owlapitools.decomposition.LocalityChecker
 
isTopEquivalent(OWLObject) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
isTopEquivalent(OWLObject) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
isTopEquivalent(OWLObject) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
isTopOrBuiltInDataType(OWLDataRange) - Method in class org.semanticweb.owlapitools.decomposition.SigAccessor
 
isUsed() - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
isValueSetsEqual() - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 

J

JustificationMap - Class in org.semanticweb.owlapi.debugging
 
JustificationMap(OWLClassExpression, Set<OWLAxiom>) - Constructor for class org.semanticweb.owlapi.debugging.JustificationMap
Instantiates a new justification map.

K

keySet() - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
keySet() - Method in class uk.ac.manchester.cs.chainsaw.ArrayIntMap
 

L

local(OWLAxiom) - Method in interface org.semanticweb.owlapitools.decomposition.LocalityChecker
 
local(OWLAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
local(OWLAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
LocalFastSet - Class in uk.ac.manchester.cs.chainsaw
 
LocalFastSet() - Constructor for class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
LocalityChecker - Interface in org.semanticweb.owlapitools.decomposition
 
LocalityClass - Enum in com.clarkparsia.owlapi.modularity.locality
Types of locality classes that can be used.
LocalityClass - Enum in org.semanticweb.owlapi.modularity.locality
Types of locality classes that can be used.
LocalityEvaluator - Interface in com.clarkparsia.owlapi.modularity.locality
A locality evaluator.
LocalityEvaluator - Interface in org.semanticweb.owlapi.modularity.locality
Interface for classes that test whether an axiom is local with respect to a signature.
LocalityModuleExtractor - Class in org.semanticweb.owlapi.modularity.locality
Abstract class for convenience implementation of locality-based ModuleExtractors.
LogicalAxiomCount - Class in org.semanticweb.owlapi.metrics
 
LogicalAxiomCount(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.LogicalAxiomCount
Instantiates a new logical axiom count.

M

MaximumNumberOfNamedSuperclasses - Class in org.semanticweb.owlapi.metrics
 
MaximumNumberOfNamedSuperclasses(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.MaximumNumberOfNamedSuperclasses
Instantiates a new maximum number of named superclasses.
Modularizer - Class in org.semanticweb.owlapitools.decomposition
class to create modules of an ontology wrt module type
Modularizer(LocalityChecker) - Constructor for class org.semanticweb.owlapitools.decomposition.Modularizer
 
Modularizer - Class in uk.ac.manchester.cs.factplusplusad
class to create modules of an ontology wrt module type
ModuleExtractor - Interface in org.semanticweb.owlapi.modularity
Interface for classes that extract modules based on fixed axiom bases.
ModuleMethod - Enum in org.semanticweb.owlapi.atomicdecomposition
Module types - for use with Chiara and Dmitry's implementation of modularisation and atomic decomposition, as implemented in FaCT++/OWLAPITOOLS.
moduleToSignatureOf(OWLAxiom) - Method in class org.semanticweb.owlapi.modularity.AtomicDecomposition
Returns the module within the AtomicDecomposition.axioms() with respect to the signature of the given axiom.
ModuleType - Enum in uk.ac.manchester.cs.owlapi.modularity
Enumeration for module types.
MultipleExplanationGenerator - Interface in com.clarkparsia.owlapi.explanation
multiple explanation generator.
MutableTree<N> - Class in uk.ac.manchester.cs.owl.explanation.ordering
 
MutableTree(N) - Constructor for class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 

N

NegationalNormalFormConverter - Class in org.semanticweb.owlapi.normalform
 
NegationalNormalFormConverter(OWLDataFactory) - Constructor for class org.semanticweb.owlapi.normalform.NegationalNormalFormConverter
Instantiates a new negational normal form converter.
newAtom() - Method in class org.semanticweb.owlapitools.decomposition.AtomList
 
NodeRenderer<N> - Interface in uk.ac.manchester.cs.owl.explanation.ordering
 
noModuleContains(OWLAxiom) - Method in class org.semanticweb.owlapi.modularity.AbstractModuleExtractor
 
noModuleContains(OWLAxiom) - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Returns true if it is guaranteed that the given OWLAxiom is not contained in any module (regardless of other axioms or the signature) calculated by the module extraction method this ModuleExtractor is based on; false when no such guarantee can be made (Note: This does not mean that there is some module that contains the given axiom).
NormalFormRewriter - Interface in org.semanticweb.owlapi.normalform
 
nProcessedAx() - Method in class org.semanticweb.owlapitools.decomposition.SigIndex
 
NullExplanationOrderer - Class in uk.ac.manchester.cs.owl.explanation.ordering
An implementation of an explanation order, which doesn't really do any ordering!.
NullExplanationOrderer() - Constructor for class uk.ac.manchester.cs.owl.explanation.ordering.NullExplanationOrderer
 
NumberOfClassesWithMultipleInheritance - Class in org.semanticweb.owlapi.metrics
 
NumberOfClassesWithMultipleInheritance(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.NumberOfClassesWithMultipleInheritance
Instantiates a new number of classes with multiple inheritance.

O

ObjectCountMetric<E> - Class in org.semanticweb.owlapi.metrics
 
ObjectCountMetric(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.ObjectCountMetric
Instantiates a new object count metric.
ontologiesChanged(List<? extends OWLOntologyChange>) - Method in class com.clarkparsia.owlapi.explanation.util.DefinitionTracker
 
ontologiesChanged(List<? extends OWLOntologyChange>) - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
 
OntologyAtom - Class in org.semanticweb.owlapitools.decomposition
An ontology atom including module and dependencies information.
OntologyAtom() - Constructor for class org.semanticweb.owlapitools.decomposition.OntologyAtom
 
OntologyBasedModularizer - Class in uk.ac.manchester.cs.factplusplusad
Ontology based modularizer.
OntologyBasedModularizer(OWLOntology, ModuleMethod) - Constructor for class uk.ac.manchester.cs.factplusplusad.OntologyBasedModularizer
 
OntologySegmenter - Interface in org.semanticweb.owlapi.modularity
An interface for any class implementing ontology segmentation or modularisation.
OntologyUtils - Class in com.clarkparsia.owlapi.explanation.util
Some ontology utils methods.
org.semanticweb.owlapi.atomicdecomposition - package org.semanticweb.owlapi.atomicdecomposition
 
org.semanticweb.owlapi.debugging - package org.semanticweb.owlapi.debugging
Debugging package.
org.semanticweb.owlapi.metrics - package org.semanticweb.owlapi.metrics
Metrics package.
org.semanticweb.owlapi.modularity - package org.semanticweb.owlapi.modularity
Modularity interface package.
org.semanticweb.owlapi.modularity.locality - package org.semanticweb.owlapi.modularity.locality
 
org.semanticweb.owlapi.normalform - package org.semanticweb.owlapi.normalform
Normal form package.
org.semanticweb.owlapitools.decomposition - package org.semanticweb.owlapitools.decomposition
 
OWLDebugger - Interface in org.semanticweb.owlapi.debugging
 
OWLMetric<M> - Interface in org.semanticweb.owlapi.metrics
Represents a metric about some aspect of an ontology and possibly its imports closure.
OWLMetricManager - Class in org.semanticweb.owlapi.metrics
 
OWLMetricManager(List<OWLMetric<?>>) - Constructor for class org.semanticweb.owlapi.metrics.OWLMetricManager
Instantiates a new OWL metric manager.
OWLObjectComplementOfExtractor - Class in org.semanticweb.owlapi.normalform
Extracts the parts of a class expression which are negated.
OWLObjectComplementOfExtractor() - Constructor for class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
 

P

preprocessOntology(Collection<AxiomWrapper>) - Method in interface org.semanticweb.owlapitools.decomposition.LocalityChecker
Allow the checker to preprocess an ontology if necessary
preprocessOntology(Collection<AxiomWrapper>) - Method in class org.semanticweb.owlapitools.decomposition.Modularizer
allow the checker to preprocess an ontology if necessary
preprocessOntology(Collection<AxiomWrapper>) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
preprocessOntology(Collection<AxiomWrapper>) - Method in class org.semanticweb.owlapitools.decomposition.SigIndex
preprocess given set of axioms
preprocessOntology(Collection<AxiomWrapper>) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
preprocessOntology(Collection<AxiomWrapper>) - Method in class uk.ac.manchester.cs.factplusplusad.Modularizer
allow the checker to preprocess an ontology if necessary
processAx(AxiomWrapper) - Method in class org.semanticweb.owlapitools.decomposition.SigIndex
process an axiom wrt its Used status
put(K, V) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
put(int, int) - Method in class uk.ac.manchester.cs.chainsaw.ArrayIntMap
 
putAll(IdentityMultiMap<K, V>) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
putAll(K, Collection<V>) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 

R

recomputeMetric() - Method in class org.semanticweb.owlapi.metrics.AverageAssertedNamedSuperclassCount
 
recomputeMetric() - Method in class org.semanticweb.owlapi.metrics.DLExpressivity
 
recomputeMetric() - Method in class org.semanticweb.owlapi.metrics.MaximumNumberOfNamedSuperclasses
 
recomputeMetric() - Method in class org.semanticweb.owlapi.metrics.NumberOfClassesWithMultipleInheritance
 
recomputeMetric() - Method in class org.semanticweb.owlapi.metrics.ObjectCountMetric
 
reduceGraph() - Method in class org.semanticweb.owlapitools.decomposition.AtomList
reduce graph of the atoms in the structure
ReferencedClassCount - Class in org.semanticweb.owlapi.metrics
 
ReferencedClassCount(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.ReferencedClassCount
Instantiates a new referenced class count.
ReferencedDataPropertyCount - Class in org.semanticweb.owlapi.metrics
 
ReferencedDataPropertyCount(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.ReferencedDataPropertyCount
Instantiates a new referenced data property count.
ReferencedIndividualCount - Class in org.semanticweb.owlapi.metrics
 
ReferencedIndividualCount(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.ReferencedIndividualCount
Instantiates a new referenced individual count.
ReferencedObjectPropertyCount - Class in org.semanticweb.owlapi.metrics
 
ReferencedObjectPropertyCount(OWLOntology) - Constructor for class org.semanticweb.owlapi.metrics.ReferencedObjectPropertyCount
Instantiates a new referenced object property count.
remove(K) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
removes the set of values connected to the key
remove(K, V) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
removes the value connected to the key; if there is more than one value connected to the key, only one is removed
remove(int) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
remove(int) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
remove(int) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
removeAll(int, int) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
remove all elements between the two positions
removeAll(int, int) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
removeAll(int, int) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
removeAllValues(int...) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
removeAllValues(int...) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
removeAllValues(int...) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
removeAt(int) - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
removeAt(int) - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
removeAt(int) - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
removeAxiom(OWLAxiom, Stream<OWLOntology>) - Static method in class com.clarkparsia.owlapi.explanation.util.OntologyUtils
Removes an axiom from all the given ontologies that contains the axiom and returns those ontologies.
removeChild(MutableTree<N>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
render(OWLAxiom, Set<Set<OWLAxiom>>) - Method in class com.clarkparsia.owlapi.explanation.io.ConciseExplanationRenderer
 
render(OWLAxiom, Set<Set<OWLAxiom>>) - Method in interface com.clarkparsia.owlapi.explanation.io.ExplanationRenderer
Render.
render(OWLAxiom, Set<Set<OWLAxiom>>) - Method in class com.clarkparsia.owlapi.explanation.io.SilentExplanationRenderer
 
render(Tree<N>) - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.NodeRenderer
Render.
replace(MutableTree<N>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
reset() - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
clear the visitor.

S

SatisfiabilityConverter - Class in com.clarkparsia.owlapi.explanation
Satisfiability converter.
SatisfiabilityConverter(OWLDataFactory) - Constructor for class com.clarkparsia.owlapi.explanation.SatisfiabilityConverter
Instantiates a new satisfiability converter.
selectAxioms(OWLOntology) - Static method in class org.semanticweb.owlapitools.decomposition.AxiomSelector
 
selectAxioms(OWLOntology, boolean) - Static method in class org.semanticweb.owlapitools.decomposition.AxiomSelector
 
SemanticLocalityChecker - Class in org.semanticweb.owlapitools.decomposition
semantic locality checker for DL axioms
SemanticLocalityChecker(OWLReasonerFactory, OWLOntologyManager) - Constructor for class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
SemanticLocalityChecker(OWLReasoner) - Constructor for class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
SemanticLocalityEvaluator - Class in com.clarkparsia.owlapi.modularity.locality
Semantic locality evaluator.
SemanticLocalityEvaluator(OWLOntologyManager, OWLReasonerFactory) - Constructor for class com.clarkparsia.owlapi.modularity.locality.SemanticLocalityEvaluator
Instantiates a new semantic locality evaluator.
SemanticLocalityEvaluator - Class in org.semanticweb.owlapi.modularity.locality
Thread safe class for checking semantic locality.
SemanticLocalityEvaluator(LocalityClass, OWLOntologyManager, OWLReasonerFactory) - Constructor for class org.semanticweb.owlapi.modularity.locality.SemanticLocalityEvaluator
Instantiates a new SemanticLocalityEvaluator
SemanticLocalityModuleExtractor - Class in org.semanticweb.owlapi.modularity.locality
Class to extract modules based on semantic locality.
SemanticLocalityModuleExtractor(LocalityClass, Stream<OWLAxiom>, OWLOntologyManager, OWLReasonerFactory) - Constructor for class org.semanticweb.owlapi.modularity.locality.SemanticLocalityModuleExtractor
Instantiates a new SemanticLocalityEvaluator.
setAtom(OntologyAtom) - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
setEntry(K, Collection<V>) - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
setId(int) - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
setId(int) - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
 
setImportsClosureUsed(boolean) - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
 
setImportsClosureUsed(boolean) - Method in interface org.semanticweb.owlapi.metrics.OWLMetric
Sets whether this metric uses the imports closure of the current ontology.
setInModule(boolean) - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
setInSearchSpace(boolean) - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
setLabel(Collection<OWLEntity>) - Method in class uk.ac.manchester.cs.atomicdecomposition.Atom
 
setLocality(boolean) - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
setLocality(boolean, boolean) - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
setModule(Collection<AxiomWrapper>) - Method in class org.semanticweb.owlapitools.decomposition.OntologyAtom
set the module axioms
setModuleType(ModuleType) - Method in class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
Changes the module type for this extractor without deleting the stored referenced entities.
setNodeRenderer(NodeRenderer<N>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
setNodeRenderer(NodeRenderer<N>) - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Sets the node renderer.
setOntology(OWLOntology) - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
 
setOntology(OWLOntology) - Method in interface org.semanticweb.owlapi.metrics.OWLMetric
Sets the "root" ontology.
setOntology(OWLOntology) - Method in class org.semanticweb.owlapi.metrics.OWLMetricManager
 
setParent(MutableTree<N>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
setProgressMonitor(ExplanationProgressMonitor) - Method in class com.clarkparsia.owlapi.explanation.HSTExplanationGenerator
 
setProgressMonitor(ExplanationProgressMonitor) - Method in interface com.clarkparsia.owlapi.explanation.MultipleExplanationGenerator
Sets the progress monitor for this multiple explanation generator.
setSignatureValue(Signature) - Method in interface org.semanticweb.owlapitools.decomposition.LocalityChecker
 
setSignatureValue(Signature) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
set a new value of a signature (without changing a locality parameters)
setSignatureValue(Signature) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
set a new value of a signature (without changing a locality parameters)
setUsed(boolean) - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
SigAccessor - Class in org.semanticweb.owlapitools.decomposition
helper class to set signature and locality class
SigAccessor(LocalityChecker) - Constructor for class org.semanticweb.owlapitools.decomposition.SigAccessor
 
SigIndex - Class in org.semanticweb.owlapitools.decomposition
signature index
SigIndex(LocalityChecker) - Constructor for class org.semanticweb.owlapitools.decomposition.SigIndex
 
signature() - Method in class org.semanticweb.owlapitools.decomposition.AxiomWrapper
 
Signature - Class in org.semanticweb.owlapitools.decomposition
class to hold the signature of a module
Signature() - Constructor for class org.semanticweb.owlapitools.decomposition.Signature
empty signature
Signature(Stream<OWLEntity>) - Constructor for class org.semanticweb.owlapitools.decomposition.Signature
 
SilentExplanationProgressMonitor - Class in com.clarkparsia.owlapi.explanation.util
The Class SilentExplanationProgressMonitor.
SilentExplanationProgressMonitor() - Constructor for class com.clarkparsia.owlapi.explanation.util.SilentExplanationProgressMonitor
 
SilentExplanationRenderer - Class in com.clarkparsia.owlapi.explanation.io
Null implementation.
SilentExplanationRenderer() - Constructor for class com.clarkparsia.owlapi.explanation.io.SilentExplanationRenderer
 
SingleExplanationGenerator - Interface in com.clarkparsia.owlapi.explanation
Explanation generator for a single explanation.
SingleExplanationGeneratorImpl - Class in com.clarkparsia.owlapi.explanation
The Class SingleExplanationGeneratorImpl.
SingleExplanationGeneratorImpl(OWLOntology, OWLReasonerFactory, OWLReasoner) - Constructor for class com.clarkparsia.owlapi.explanation.SingleExplanationGeneratorImpl
Instantiates a new single explanation generator impl.
size() - Method in class org.semanticweb.owlapitools.decomposition.AtomList
 
size() - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
size() - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
size() - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
size() - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
sortChildren(Comparator<Tree<N>>) - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
sortChildren(Comparator<Tree<N>>) - Method in interface uk.ac.manchester.cs.owl.explanation.ordering.Tree
Sorts the children using the specified comparator.
startRendering(Writer) - Method in class com.clarkparsia.owlapi.explanation.io.ConciseExplanationRenderer
 
startRendering(Writer) - Method in interface com.clarkparsia.owlapi.explanation.io.ExplanationRenderer
Start rendering.
startRendering(Writer) - Method in class com.clarkparsia.owlapi.explanation.io.SilentExplanationRenderer
 
supportedLocalityClasses() - Static method in class com.clarkparsia.owlapi.modularity.locality.SyntacticLocalityEvaluator
Returns all supported locality classes.
SyntacticLocalityChecker - Class in org.semanticweb.owlapitools.decomposition
syntactic locality checker for DL axioms
SyntacticLocalityChecker() - Constructor for class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
Fresh checker.
SyntacticLocalityEvaluator - Class in com.clarkparsia.owlapi.modularity.locality
Syntactic locality evaluator.
SyntacticLocalityEvaluator(LocalityClass) - Constructor for class com.clarkparsia.owlapi.modularity.locality.SyntacticLocalityEvaluator
Constructs a new locality evaluator for the given locality class.
SyntacticLocalityEvaluator - Enum in org.semanticweb.owlapi.modularity.locality
Thread safe class for checking syntactic locality.
SyntacticLocalityModuleExtractor - Class in org.semanticweb.owlapi.modularity.locality
Class to extract modules based on syntactic locality.
SyntacticLocalityModuleExtractor(LocalityClass, Stream<OWLAxiom>) - Constructor for class org.semanticweb.owlapi.modularity.locality.SyntacticLocalityModuleExtractor
SyntacticLocalityModuleExtractor - Class in uk.ac.manchester.cs.owlapi.modularity
Implementation of module extraction based on syntactic locality.
SyntacticLocalityModuleExtractor(OWLOntologyManager, Stream<OWLAxiom>, ModuleType) - Constructor for class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
Creates a new module extractor for a subset of a given ontology, its manager, and a specified type of locality.
SyntacticLocalityModuleExtractor(OWLOntologyManager, Stream<OWLAxiom>, ModuleType, boolean) - Constructor for class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
Creates a new module extractor for a subset of a given ontology, its manager, and a specified type of locality.
SyntacticLocalityModuleExtractor(OWLOntologyManager, OWLOntologyLoaderConfiguration, Stream<OWLAxiom>, ModuleType, boolean) - Constructor for class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
Creates a new module extractor for a subset of a given ontology, its manager, and a specified type of locality.
SyntacticLocalityModuleExtractor(OWLOntologyManager, OWLOntology, ModuleType) - Constructor for class uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor
Creates a new module extractor for a given ontology, its manager, and a specified type of locality.

T

tautologies() - Method in class org.semanticweb.owlapi.modularity.AbstractModuleExtractor
 
tautologies() - Method in interface org.semanticweb.owlapi.modularity.ModuleExtractor
Returns from the axiom base of this extractor exactly those that are guaranteed not to be contained in any module calculated by this ModuleExtractor.
toIntArray() - Method in interface uk.ac.manchester.cs.chainsaw.FastSet
 
toIntArray() - Method in class uk.ac.manchester.cs.chainsaw.FastSetSimple
 
toIntArray() - Method in class uk.ac.manchester.cs.chainsaw.LocalFastSet
 
topCLocal() - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
TopEquivalenceEvaluator - Class in org.semanticweb.owlapitools.decomposition
check whether class expressions are equivalent to top wrt given locality class
TopEquivalenceEvaluator(LocalityChecker) - Constructor for class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
topRLocal() - Method in class org.semanticweb.owlapitools.decomposition.SigAccessor
 
topRLocal() - Method in class org.semanticweb.owlapitools.decomposition.Signature
 
toString() - Method in class com.clarkparsia.owlapi.explanation.BlackBoxExplanation
 
toString() - Method in class org.semanticweb.owlapi.metrics.AbstractOWLMetric
 
toString() - Method in class org.semanticweb.owlapi.metrics.OWLMetricManager
 
toString() - Method in class org.semanticweb.owlapitools.decomposition.IdentityMultiMap
 
toString() - Method in class uk.ac.manchester.cs.atomicdecomposition.Atom
 
toString() - Method in class uk.ac.manchester.cs.chainsaw.ArrayIntMap
 
toString() - Method in class uk.ac.manchester.cs.owl.explanation.ordering.MutableTree
 
toString() - Method in enum uk.ac.manchester.cs.owlapi.modularity.ModuleType
 
TransactionAwareSingleExpGen - Interface in com.clarkparsia.owlapi.explanation
transactional support for single explanation generator.
Tree<N> - Interface in uk.ac.manchester.cs.owl.explanation.ordering
 

U

uk.ac.manchester.cs.atomicdecomposition - package uk.ac.manchester.cs.atomicdecomposition
 
uk.ac.manchester.cs.chainsaw - package uk.ac.manchester.cs.chainsaw
 
uk.ac.manchester.cs.factplusplusad - package uk.ac.manchester.cs.factplusplusad
This package contains a port of FaCT++ Atomic Decomposition implementation.
uk.ac.manchester.cs.owl.explanation.ordering - package uk.ac.manchester.cs.owl.explanation.ordering
Explanation ordering package.
uk.ac.manchester.cs.owlapi.modularity - package uk.ac.manchester.cs.owlapi.modularity
Modularity package.
UnsatisfiableClassCountMetric - Class in org.semanticweb.owlapi.metrics
 
UnsatisfiableClassCountMetric(OWLReasoner) - Constructor for class org.semanticweb.owlapi.metrics.UnsatisfiableClassCountMetric
Instantiates a new unsatisfiable class count metric.

V

valueOf(String) - Static method in enum com.clarkparsia.owlapi.modularity.locality.LocalityClass
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.semanticweb.owlapi.atomicdecomposition.ModuleMethod
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.semanticweb.owlapi.modularity.locality.LocalityClass
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.semanticweb.owlapi.modularity.locality.SyntacticLocalityEvaluator
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum uk.ac.manchester.cs.owlapi.modularity.ModuleType
Returns the enum constant of this type with the specified name.
values() - Static method in enum com.clarkparsia.owlapi.modularity.locality.LocalityClass
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.semanticweb.owlapi.atomicdecomposition.ModuleMethod
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.semanticweb.owlapi.modularity.locality.LocalityClass
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.semanticweb.owlapi.modularity.locality.SyntacticLocalityEvaluator
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum uk.ac.manchester.cs.owlapi.modularity.ModuleType
Returns an array containing the constants of this enum type, in the order they are declared.
visit(OWLSubClassOfAxiom) - Method in class org.semanticweb.owlapi.debugging.DebuggerClassExpressionGenerator
 
visit(OWLDataPropertyDomainAxiom) - Method in class org.semanticweb.owlapi.debugging.DebuggerClassExpressionGenerator
 
visit(OWLObjectPropertyDomainAxiom) - Method in class org.semanticweb.owlapi.debugging.DebuggerClassExpressionGenerator
 
visit(OWLObjectPropertyRangeAxiom) - Method in class org.semanticweb.owlapi.debugging.DebuggerClassExpressionGenerator
 
visit(OWLSubObjectPropertyOfAxiom) - Method in class org.semanticweb.owlapi.debugging.DebuggerClassExpressionGenerator
 
visit(OWLClassAssertionAxiom) - Method in class org.semanticweb.owlapi.debugging.DebuggerClassExpressionGenerator
 
visit(OWLEquivalentClassesAxiom) - Method in class org.semanticweb.owlapi.debugging.DebuggerClassExpressionGenerator
 
visit(OWLObjectAllValuesFrom) - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
 
visit(OWLObjectComplementOf) - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
 
visit(OWLObjectExactCardinality) - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
 
visit(OWLObjectIntersectionOf) - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
 
visit(OWLObjectMaxCardinality) - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
 
visit(OWLObjectMinCardinality) - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
 
visit(OWLObjectSomeValuesFrom) - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
 
visit(OWLObjectUnionOf) - Method in class org.semanticweb.owlapi.normalform.OWLObjectComplementOfExtractor
 
visit(OWLClass) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectComplementOf) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectIntersectionOf) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectUnionOf) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectOneOf) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectHasSelf) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectHasValue) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectSomeValuesFrom) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectAllValuesFrom) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectMinCardinality) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectMaxCardinality) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectExactCardinality) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDataHasValue) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDataSomeValuesFrom) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDataAllValuesFrom) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDataMinCardinality) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDataMaxCardinality) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDataExactCardinality) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectProperty) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLObjectInverseOf) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDataProperty) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDatatype) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLLiteral) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDataComplementOf) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDataOneOf) - Method in class org.semanticweb.owlapitools.decomposition.BotEquivalenceEvaluator
 
visit(OWLDeclarationAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLEquivalentClassesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLDisjointClassesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLDisjointUnionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLEquivalentObjectPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLEquivalentDataPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLDisjointObjectPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLDisjointDataPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLSameIndividualAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLDifferentIndividualsAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLInverseObjectPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLSubPropertyChainOfAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLSubObjectPropertyOfAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLSubDataPropertyOfAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLObjectPropertyDomainAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
Domain(R) = C is tautology iff ER.Top [= C
visit(OWLDataPropertyDomainAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLObjectPropertyRangeAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
Range(R) = C is tautology iff ER.~C is unsatisfiable
visit(OWLDataPropertyRangeAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLTransitiveObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLReflexiveObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLIrreflexiveObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLSymmetricObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLAsymmetricObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLFunctionalObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLFunctionalDataPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLInverseFunctionalObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLSubClassOfAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLClassAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
for top locality, this might be local
visit(OWLObjectPropertyAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
R(i,j) holds if {i} [= \ER.{j}
visit(OWLNegativeObjectPropertyAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
!R(i,j) holds if {i} [= \AR.!{j}=!\ER.{j}
visit(OWLDataPropertyAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
R(i,v) holds if {i} [= \ER.{v}
visit(OWLNegativeDataPropertyAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SemanticLocalityChecker
 
visit(OWLDeclarationAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLEquivalentClassesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLDisjointClassesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLDisjointUnionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLEquivalentObjectPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLEquivalentDataPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLDisjointObjectPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLDisjointDataPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLSameIndividualAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLDifferentIndividualsAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLInverseObjectPropertiesAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLSubObjectPropertyOfAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLSubDataPropertyOfAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLObjectPropertyDomainAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLDataPropertyDomainAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLObjectPropertyRangeAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLDataPropertyRangeAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLTransitiveObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLReflexiveObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
as BotRole is irreflexive, the only local axiom is topEquivalent(R)
visit(OWLIrreflexiveObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLSymmetricObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLAsymmetricObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLFunctionalObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLFunctionalDataPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLInverseFunctionalObjectPropertyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLSubClassOfAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLClassAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLObjectPropertyAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLNegativeObjectPropertyAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLDataPropertyAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLNegativeDataPropertyAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLAnnotationAssertionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLSubAnnotationPropertyOfAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLAnnotationPropertyDomainAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLAnnotationPropertyRangeAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLSubPropertyChainOfAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLHasKeyAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLDatatypeDefinitionAxiom) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(SWRLRule) - Method in class org.semanticweb.owlapitools.decomposition.SyntacticLocalityChecker
 
visit(OWLClass) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectComplementOf) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectIntersectionOf) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectUnionOf) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectOneOf) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectHasSelf) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectHasValue) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectSomeValuesFrom) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectAllValuesFrom) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectMinCardinality) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectMaxCardinality) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectExactCardinality) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDataHasValue) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDataSomeValuesFrom) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDataAllValuesFrom) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDataMinCardinality) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDataMaxCardinality) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDataExactCardinality) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectProperty) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLObjectInverseOf) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDataProperty) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDatatype) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLLiteral) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDataComplementOf) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDatatypeRestriction) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 
visit(OWLDataOneOf) - Method in class org.semanticweb.owlapitools.decomposition.TopEquivalenceEvaluator
 

W

wrap(List<OWLAxiom>) - Static method in class org.semanticweb.owlapitools.decomposition.AxiomSelector
 
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