org.coode.owlapi.obo.parser

Class AbstractTagValueHandler

java.lang.Object

org.coode.owlapi.obo.parser.AbstractTagValueHandler

All Implemented Interfaces:

TagValueHandler

Direct Known Subclasses:

AltIdTagValueHandler, AsymmetricHandler, DataVersionTagValueHandler, DefaultNamespaceTagValueHandler, DefTagValueHandler, DisjointFromHandler, DomainHandler, IDSpaceTagValueHandler, IDTagValueHandler, IntersectionOfHandler, InverseHandler, IsATagValueHandler, IsObsoleteTagValueHandler, NameTagValueHandler, OntologyTagValueHandler, PartOfTagValueHandler, ReflexiveHandler, RelationshipTagValueHandler, SymmetricTagValueHandler, SynonymTagValueHandler, SynonymTypeDefTagHandler, TransitiveOverHandler, TransitiveTagValueHandler, UnionOfHandler, XRefTagHandler

public abstract class AbstractTagValueHandler
extends Object
implements TagValueHandler

Author:

Matthew Horridge, The University Of Manchester, Bio-Health Informatics Group, Date: 10-Jan-2007

Constructor Summary

Constructors

Constructor and Description
AbstractTagValueHandler(String tag, OBOConsumer consumer)

Method Summary

Modifier and Type	Method and Description
protected void	addAnnotation(String id, String uriID, org.semanticweb.owlapi.model.OWLLiteral value)
void	applyChange(org.semanticweb.owlapi.model.OWLOntologyChange change)
org.semanticweb.owlapi.model.OWLAnnotation	getAnnotationForTagValuePair(String tagName, String value) Gets an OWLAnnotation for a tag value pair.
protected org.semanticweb.owlapi.model.OWLLiteral	getBooleanConstant(boolean b)
org.semanticweb.owlapi.model.OWLClass	getClassFromId(String s)
OBOConsumer	getConsumer()
org.semanticweb.owlapi.model.OWLClass	getCurrentClass()
org.semanticweb.owlapi.model.OWLDataFactory	getDataFactory()
org.semanticweb.owlapi.model.IRI	getIRIFromOBOId(String id)
org.semanticweb.owlapi.model.OWLOntology	getOntology()
protected org.semanticweb.owlapi.model.OWLClass	getOWLClass(String id)
protected org.semanticweb.owlapi.model.OWLClassExpression	getOWLClassOrRestriction(String termList)
protected org.semanticweb.owlapi.model.OWLObjectProperty	getOWLObjectProperty(String id)
org.semanticweb.owlapi.model.OWLOntologyManager	getOWLOntologyManager()
org.semanticweb.owlapi.model.IRI	getTagIRI(OBOVocabulary vocabulary)
org.semanticweb.owlapi.model.IRI	getTagIRI(String tagName) Gets an IRI for a tag name.
String	getTagName() Gets the name of the tag handled by this tag value handler
protected String	getUnquotedString(String value)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.coode.owlapi.obo.parser.TagValueHandler

handle

Constructor Detail

AbstractTagValueHandler

public AbstractTagValueHandler(String tag,
                               OBOConsumer consumer)

Parameters:

tag - tag

consumer - consumer

Method Detail

getTagName

public String getTagName()

Description copied from interface: TagValueHandler

Gets the name of the tag handled by this tag value handler

Specified by:

getTagName in interface TagValueHandler

Returns:

The name of the tag

getOWLOntologyManager

public org.semanticweb.owlapi.model.OWLOntologyManager getOWLOntologyManager()

Returns:

manager

getOntology

public org.semanticweb.owlapi.model.OWLOntology getOntology()

Returns:

ontology

applyChange

public void applyChange(org.semanticweb.owlapi.model.OWLOntologyChange change)

Parameters:

change - change

getConsumer

public OBOConsumer getConsumer()

Returns:

consumer

getDataFactory

public org.semanticweb.owlapi.model.OWLDataFactory getDataFactory()

Returns:

data factory

getTagIRI

public org.semanticweb.owlapi.model.IRI getTagIRI(OBOVocabulary vocabulary)

Parameters:

vocabulary - vocabulary

Returns:

iri

getTagIRI

public org.semanticweb.owlapi.model.IRI getTagIRI(String tagName)

Gets an IRI for a tag name. This is a helper method, which ultimately calls OBOConsumer.getIRIFromTagName(String).

Parameters:

tagName - The tag name.

Returns:

The IRI corresponding to the tag name.

getIRIFromOBOId

public org.semanticweb.owlapi.model.IRI getIRIFromOBOId(String id)

Parameters:

id - id

Returns:

iri

getAnnotationForTagValuePair

public org.semanticweb.owlapi.model.OWLAnnotation getAnnotationForTagValuePair(String tagName,
                                                                               String value)

Gets an OWLAnnotation for a tag value pair.

Parameters:

tagName - The tag name.

value - The tag value. Note that the tag value is un-escaped and stripped of double quotes if they exist.

Returns:

An OWLAnnotation that is formed by converting the tagName to an IRI and then to an OWLAnnotationProperty and the value to an OWLLiteral.

getClassFromId

public org.semanticweb.owlapi.model.OWLClass getClassFromId(String s)

Parameters:

s - id

Returns:

class

getCurrentClass

public org.semanticweb.owlapi.model.OWLClass getCurrentClass()

Returns:

current class

getOWLClass

protected org.semanticweb.owlapi.model.OWLClass getOWLClass(String id)

getOWLObjectProperty

protected org.semanticweb.owlapi.model.OWLObjectProperty getOWLObjectProperty(String id)

getUnquotedString

protected String getUnquotedString(String value)

getOWLClassOrRestriction

protected org.semanticweb.owlapi.model.OWLClassExpression getOWLClassOrRestriction(String termList)

getBooleanConstant

protected org.semanticweb.owlapi.model.OWLLiteral getBooleanConstant(boolean b)

addAnnotation

protected void addAnnotation(String id,
                             String uriID,
                             org.semanticweb.owlapi.model.OWLLiteral value)