Uses of Class
org.obolibrary.oboformat.model.Frame

Packages that use Frame

Package	Description
org.obolibrary.obo2owl
org.obolibrary.oboformat.diff
org.obolibrary.oboformat.model
org.obolibrary.oboformat.parser
org.obolibrary.oboformat.writer

Uses of Frame in org.obolibrary.obo2owl

Methods in org.obolibrary.obo2owl that return Frame

Modifier and Type	Method and Description
protected Frame	OWLAPIOwl2Obo.getTermFrame(org.semanticweb.owlapi.model.OWLClass entity)
protected Frame	OWLAPIOwl2Obo.getTypedefFrame(org.semanticweb.owlapi.model.OWLEntity entity)

Methods in org.obolibrary.obo2owl with parameters of type Frame

Modifier and Type	Method and Description
protected void	OWLAPIOwl2Obo.add(Frame f)
protected boolean	OWLAPIOwl2Obo.handleDuplicateClause(Frame frame, Clause clause) Handle a duplicate clause in a frame during translation.
protected void	OWLAPIOwl2Obo.tr(org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom aanAx, Frame frame)
protected boolean	OWLAPIOwl2Obo.tr(org.semanticweb.owlapi.model.OWLAnnotationProperty prop, org.semanticweb.owlapi.model.OWLAnnotationValue annVal, Set<org.semanticweb.owlapi.model.OWLAnnotation> qualifiers, Frame frame)
protected boolean	OWLAPIOwl2Obo.trGenericPropertyValue(org.semanticweb.owlapi.model.OWLAnnotationProperty prop, org.semanticweb.owlapi.model.OWLAnnotationValue annVal, Set<org.semanticweb.owlapi.model.OWLAnnotation> qualifiers, Frame frame)
void	OWLAPIObo2Owl.trHeaderFrame(Frame headerFrame) Tr header frame.
org.semanticweb.owlapi.model.OWLClassExpression	OWLAPIObo2Owl.trTermFrame(Frame termFrame) Tr term frame.
org.semanticweb.owlapi.model.OWLNamedObject	OWLAPIObo2Owl.trTypedefFrame(Frame typedefFrame) Tr typedef frame.
protected org.semanticweb.owlapi.model.OWLNamedObject	OWLAPIObo2Owl.trTypedefToAnnotationProperty(Frame typedefFrame) Tr typedef to annotation property.

Uses of Frame in org.obolibrary.oboformat.diff

Methods in org.obolibrary.oboformat.diff that return Frame

Modifier and Type	Method and Description
Frame	Diff.getFrame1()
Frame	Diff.getFrame2()

Methods in org.obolibrary.oboformat.diff with parameters of type Frame

Modifier and Type	Method and Description
void	Diff.setFrame1(Frame frame1)
void	Diff.setFrame2(Frame frame2)

Constructors in org.obolibrary.oboformat.diff with parameters of type Frame

Constructor and Description
Diff(String ftype, String type, Frame f1, Frame f2, Clause c, int n)
Diff(String ftype, String type, Frame f1, int n)

Uses of Frame in org.obolibrary.oboformat.model

Fields in org.obolibrary.oboformat.model declared as Frame

Modifier and Type	Field and Description
protected Frame	OBODoc.headerFrame The header frame.

Fields in org.obolibrary.oboformat.model with type parameters of type Frame

Modifier and Type	Field and Description
protected Collection<Frame>	OBODoc.annotationFrames The annotation frames.
protected Map<String,Frame>	OBODoc.instanceFrameMap The instance frame map.
protected Map<String,Frame>	OBODoc.termFrameMap The term frame map.
protected Map<String,Frame>	OBODoc.typedefFrameMap The typedef frame map.

Methods in org.obolibrary.oboformat.model that return Frame

Modifier and Type	Method and Description
Frame	OBODoc.getHeaderFrame()
Frame	OBODoc.getInstanceFrame(String id)
Frame	OBODoc.getTermFrame(String id)
Frame	OBODoc.getTermFrame(String id, boolean followImport)
Frame	OBODoc.getTypedefFrame(String id)
Frame	OBODoc.getTypedefFrame(String id, boolean followImports)

Methods in org.obolibrary.oboformat.model that return types with arguments of type Frame

Modifier and Type	Method and Description
Collection<Frame>	OBODoc.getInstanceFrames()
Collection<Frame>	OBODoc.getTermFrames()
Collection<Frame>	OBODoc.getTypedefFrames()

Methods in org.obolibrary.oboformat.model with parameters of type Frame

Modifier and Type	Method and Description
void	OBODoc.addFrame(Frame f) Adds the frame.
void	OBODoc.addInstanceFrame(Frame f) Adds the instance frame.
void	OBODoc.addTermFrame(Frame f) Adds the term frame.
void	OBODoc.addTypedefFrame(Frame f) Adds the typedef frame.
void	Frame.merge(Frame extFrame)
void	OBODoc.setHeaderFrame(Frame headerFrame)

Constructors in org.obolibrary.oboformat.model with parameters of type Frame

Constructor and Description
FrameStructureException(Frame frame, String msg) Instantiates a new frame structure exception.

Uses of Frame in org.obolibrary.oboformat.parser

Methods in org.obolibrary.oboformat.parser that return Frame

Modifier and Type	Method and Description
protected Frame	XrefExpander.Rule.getTargetFrame(String id)

Methods in org.obolibrary.oboformat.parser with parameters of type Frame

Modifier and Type	Method and Description
abstract void	XrefExpander.Rule.expand(Frame sf, String id, String xRef)
void	XrefExpander.EquivalenceExpansion.expand(Frame sf, String id, String xRef)
void	XrefExpander.HasSubClassExpansion.expand(Frame sf, String id, String xRef)
void	XrefExpander.GenusDifferentiaExpansion.expand(Frame sf, String id, String xRef)
void	XrefExpander.ReverseGenusDifferentiaExpansion.expand(Frame sf, String id, String xRef)
void	XrefExpander.IsaExpansion.expand(Frame sf, String id, String xRef)
void	XrefExpander.RelationshipExpansion.expand(Frame sf, String id, String xRef)
protected void	OBOFormatParser.parseHeaderClause(Frame h)
protected boolean	OBOFormatParser.parseHeaderClauseNl(Frame h) header-clause ::= format-version-TVP | ...
void	OBOFormatParser.parseHeaderFrame(Frame h)
protected void	OBOFormatParser.parseIdLine(Frame f)
protected void	OBOFormatParser.parseTermFrameClauseEOL(Frame f)
protected void	OBOFormatParser.parseTypedefFrameClauseEOL(Frame f)

Uses of Frame in org.obolibrary.oboformat.writer

Methods in org.obolibrary.oboformat.writer with parameters of type Frame

Modifier and Type	Method and Description
void	OBOFormatWriter.write(Frame frame, BufferedWriter writer, OBOFormatWriter.NameProvider nameProvider)
void	OBOFormatWriter.writeHeader(Frame frame, BufferedWriter writer, OBOFormatWriter.NameProvider nameProvider) Write header.