org.obolibrary.macro

Class MacroExpansionVisitor

java.lang.Object

org.obolibrary.macro.MacroExpansionVisitor

public class MacroExpansionVisitor
extends Object

Author:

cjm TODO - allow use of prefixes

Field Summary

Fields

Modifier and Type	Field and Description
protected Set<org.semanticweb.owlapi.model.OWLAnnotation>	extraAnnotations
protected static Logger	LOG
protected ManchesterSyntaxTool	manchesterSyntaxTool
protected boolean	shouldTransferAnnotations

Constructor Summary

Constructors

Constructor and Description
MacroExpansionVisitor(org.semanticweb.owlapi.model.OWLOntology ontology)
MacroExpansionVisitor(org.semanticweb.owlapi.model.OWLOntology ontology, boolean shouldAddExpansionMarker)
MacroExpansionVisitor(org.semanticweb.owlapi.model.OWLOntology ontology, boolean shouldTransferAnnotations, boolean shouldAddExpansionMarker)
MacroExpansionVisitor(org.semanticweb.owlapi.model.OWLOntology inputOntology, Set<org.semanticweb.owlapi.model.OWLAnnotation> extraAnnotations, boolean shouldTransferAnnotations, boolean shouldAddExpansionMarker)

Method Summary

Modifier and Type	Method and Description
void	dispose() Call this method to clear internal references.
org.semanticweb.owlapi.model.OWLOntology	expandAll()
org.obolibrary.macro.MacroExpansionVisitor.MacroExpansions	getMacroExpansions()
void	setShouldTransferAnnotations(boolean shouldTransferAnnotations)
boolean	shouldTransferAnnotations()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

LOG

protected static final Logger LOG

manchesterSyntaxTool

protected ManchesterSyntaxTool manchesterSyntaxTool

shouldTransferAnnotations

protected boolean shouldTransferAnnotations

extraAnnotations

protected Set<org.semanticweb.owlapi.model.OWLAnnotation> extraAnnotations

Constructor Detail

MacroExpansionVisitor

public MacroExpansionVisitor(org.semanticweb.owlapi.model.OWLOntology ontology)

MacroExpansionVisitor

public MacroExpansionVisitor(org.semanticweb.owlapi.model.OWLOntology ontology,
                             boolean shouldAddExpansionMarker)

Parameters:

ontology -

shouldAddExpansionMarker -

MacroExpansionVisitor

public MacroExpansionVisitor(org.semanticweb.owlapi.model.OWLOntology ontology,
                             boolean shouldTransferAnnotations,
                             boolean shouldAddExpansionMarker)

MacroExpansionVisitor

public MacroExpansionVisitor(org.semanticweb.owlapi.model.OWLOntology inputOntology,
                             Set<org.semanticweb.owlapi.model.OWLAnnotation> extraAnnotations,
                             boolean shouldTransferAnnotations,
                             boolean shouldAddExpansionMarker)

Parameters:

inputOntology - inputOntology

extraAnnotations - extra annotations to add

shouldTransferAnnotations -

shouldAddExpansionMarker -

Method Detail

getMacroExpansions

public org.obolibrary.macro.MacroExpansionVisitor.MacroExpansions getMacroExpansions()

expandAll

public org.semanticweb.owlapi.model.OWLOntology expandAll()

Returns:

ontology with expanded macros

shouldTransferAnnotations

public boolean shouldTransferAnnotations()

setShouldTransferAnnotations

public void setShouldTransferAnnotations(boolean shouldTransferAnnotations)

dispose

public void dispose()

Call this method to clear internal references.